Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120408.Seq
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               31   0.86 
SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               31   0.86 
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)                   29   3.5  
SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_55383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1400

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 427 NVKRGAPRNGALANRMADIAQDV--IAKPTIPNCYIRWP 537
           NV    PRNG +  R   IAQ++      TIP CY+  P
Sbjct: 819 NVDWDEPRNGEIRTRWLSIAQEIRQSTNLTIPRCYLSNP 857


>SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1378

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 427 NVKRGAPRNGALANRMADIAQDV--IAKPTIPNCYIRWP 537
           NV    PRNG +  R   IAQ++      TIP CY+  P
Sbjct: 766 NVDWDEPRNGEIRTRWLSIAQEIRQSTNLTIPRCYLSNP 804


>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
          Length = 410

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = -1

Query: 680 NFVK--HVHGVGHIVAAKYHVGRTQ 612
           N+ K  H+HGV  ++AAKY +G+TQ
Sbjct: 19  NYAKDNHMHGV-RVIAAKYGIGKTQ 42


>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 188 FIISWITPSLVMSTVCGCRYSGSPCLTTLSGAGVYGIDPDSLY 60
           F+   I    + ST C  R S   C   +SG    G+ P+S Y
Sbjct: 141 FVYPDIKSVRLQSTACQTRSSARDCAPRISGGRRKGVSPESFY 183


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 299 GVIEELNKKLAFASESLAEANEKIIHFANALVTANA--GLVQAN 424
           GV+EEL  KL+   E L ++N+++   +  + + NA  G+++ N
Sbjct: 799 GVVEELENKLSKLQEKLEQSNQQLAAKSKRIESLNAEMGVLREN 842


>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1924

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 382 QCVGDRQRRIGAS*HNVKRGAPRNGALANRMADIAQD 492
           +C+G  Q+R+G S   +KR  P  G L + + D  Q+
Sbjct: 354 ECIGHVQKRVGNSLRKLKRDTP-GGKLTDALIDKLQN 389


>SB_55383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 424 HNVKRGAPRNGALANRMADIAQDVIAKPTIPNCYI 528
           HN K  APR+  L+ R  D+    I  P   NC I
Sbjct: 32  HNYKSTAPRSTKLSYRRMDVHGKDIKLPRFTNCAI 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,633,560
Number of Sequences: 59808
Number of extensions: 496797
Number of successful extensions: 1342
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)