Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120408.Seq
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr...    31   0.58 
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    29   2.3  
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    29   2.3  
Z83221-8|CAI79139.1|  469|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z83221-7|CAB05707.2|  503|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U64844-5|AAM45362.1|  368|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U64844-4|AAB18307.1|  376|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 19/86 (22%), Positives = 40/86 (46%)
 Frame = +1

Query: 34  NVDKKYKTTYSESGSIPYTPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVE 213
           ++ ++ +T   +    P+ P     VK G+ + L+   + +    V+ +  +  L  A+ 
Sbjct: 404 DLKRELETASLKDTENPFVPGDIVEVKAGELVNLRGKVMTVDGTKVVMMPDQEDLKEAIT 463

Query: 214 LQAWLLEEVIPQCWHGQVRAGRQDGH 291
           L A  L +   +  H +V +GR +GH
Sbjct: 464 LNAHELRKYFKEGDHAKVISGRYEGH 489


>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 19/86 (22%), Positives = 40/86 (46%)
 Frame = +1

Query: 34  NVDKKYKTTYSESGSIPYTPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVE 213
           ++ ++ +T   +    P+ P     VK G+ + L+   + +    V+ +  +  L  A+ 
Sbjct: 404 DLKRELETASLKDTENPFVPGDIVEVKAGELVNLRGKVMTVDGTKVVMMPDQEDLKEAIT 463

Query: 214 LQAWLLEEVIPQCWHGQVRAGRQDGH 291
           L A  L +   +  H +V +GR +GH
Sbjct: 464 LNAHELRKYFKEGDHAKVISGRYEGH 489


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +3

Query: 438 RRAAKRRTGQPHGGHCARRDSQTYNPQLLHSLAVCSLSGEKYAFLRAQKRSLNRSIKRL 614
           ++A K     P      + + Q +NP  +   + C++SGE +A + +  R     I  L
Sbjct: 21  KQAMKEVAAHPEWMSSRQIERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINIL 79


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +3

Query: 438 RRAAKRRTGQPHGGHCARRDSQTYNPQLLHSLAVCSLSGEKYAFLRAQKRSLNRSIKRL 614
           ++A K     P      + + Q +NP  +   + C++SGE +A + +  R     I  L
Sbjct: 21  KQAMKEVAAHPEWMSSRQIERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINIL 79


>Z83221-8|CAI79139.1|  469|Caenorhabditis elegans Hypothetical
           protein C49A1.4b protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 448 RNGALANRMADIAQDVIAKPTIPNCYIRWPCVR*AEKSMRFCARKS 585
           R G  A    ++ Q  I   T+PN   RWPC   A++ M     KS
Sbjct: 322 RVGFGAREATELYQSAIQLQTLPNFGQRWPC---AQRCMDLVVEKS 364


>Z83221-7|CAB05707.2|  503|Caenorhabditis elegans Hypothetical
           protein C49A1.4a protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 448 RNGALANRMADIAQDVIAKPTIPNCYIRWPCVR*AEKSMRFCARKS 585
           R G  A    ++ Q  I   T+PN   RWPC   A++ M     KS
Sbjct: 356 RVGFGAREATELYQSAIQLQTLPNFGQRWPC---AQRCMDLVVEKS 398


>U64844-5|AAM45362.1|  368|Caenorhabditis elegans Hypothetical
           protein T22F3.2b protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -3

Query: 663 SWRWAHSRC*IPRR--TNPSV*CYG*DCAFARAETHTFLRLTNTR 535
           +W W+  R   P +   NPS+ CY   C    +     +R+ N +
Sbjct: 76  AWNWSELRENYPEKGIQNPSIYCYAISCVQLLSHVPAIVRIINAK 120


>U64844-4|AAB18307.1|  376|Caenorhabditis elegans Hypothetical
           protein T22F3.2a protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -3

Query: 663 SWRWAHSRC*IPRR--TNPSV*CYG*DCAFARAETHTFLRLTNTR 535
           +W W+  R   P +   NPS+ CY   C    +     +R+ N +
Sbjct: 76  AWNWSELRENYPEKGIQNPSIYCYAISCVQLLSHVPAIVRIINAK 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,207,289
Number of Sequences: 27780
Number of extensions: 349255
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)