Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120408.Seq
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37550.1 68418.m04522 expressed protein                             29   2.8  
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi...    29   3.8  
At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine...    28   5.0  
At1g16130.1 68414.m01933 wall-associated kinase, putative simila...    28   5.0  
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t...    27   8.7  
At1g16150.1 68414.m01935 wall-associated kinase, putative contai...    27   8.7  

>At5g37550.1 68418.m04522 expressed protein 
          Length = 230

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 399 PTPDWCKLTQC*TRRAAKRRTGQPHGGHCARRDSQTYNPQLLHSLAVCSLS 551
           P P   KL    T   ++ +  +PH  H  R D +T    LL S  + S+S
Sbjct: 85  PRPSRYKLEANKTMILSENKVSKPHSNHFLRGDQETKLSSLLDSYEIKSIS 135


>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 798

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 308 QSHHNLCPS*RPARTCPCQHCGITSSSSHACNSTA*GSL 192
           ++H + C +  PA T PC  C I    S +C   + G L
Sbjct: 260 ETHCHFCLNELPADTVPCPSCSIPVYCSESCQIQSGGML 298


>At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           7 (CDA7) [Arabidopsis thaliana] GI:3818574, cytidine
           deaminase homolog DesC [Arabidopsis thaliana]
           GI:4836445; similar to cytidine deaminase (CDD)
           [Arabidopsis thaliana] GI:3046700; contains Pfam profile
           PF00383: Cytidine and deoxycytidylate deaminase
           zinc-binding
          Length = 307

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 79  IPYTPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKS 192
           +PY   PD+V+ +G PL L+     +T  G  + I  S
Sbjct: 148 LPYRFTPDDVLPKGSPLLLEKRDNCLTLSGSTEEICSS 185


>At1g16130.1 68414.m01933 wall-associated kinase, putative similar
           to putative serine/threonine-specific protein kinase
           GI:7270012 from [Arabidopsis thaliana]
          Length = 748

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 7   VNCKQAVIVNVDKKYKTTYSESG-SIPYTPAPDNVVKQGDPLYLQPHTVLI 156
           VN     +V++     ++   +G S P TP P NV  QG P +L    +L+
Sbjct: 82  VNISLNGVVHIKAPVTSSGCSTGTSQPLTPPPLNVAGQGSPYFLTDKNLLV 132


>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor CysEP GI:2944446 from
           [Ricinus communis]
          Length = 361

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 501 GY-HVLRNVRHAVGQCAVSRRASFNIVLACTNPA 403
           GY  + R +RH  G C ++  AS+ +  + TNP+
Sbjct: 317 GYIRMQRGIRHKEGLCGIAMEASYPLKNSNTNPS 350


>At1g16150.1 68414.m01935 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 779

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 64  SESGSIPYTPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIM 186
           S   S P TP P NV  QG P +L    +L+     ++ +M
Sbjct: 108 STGTSQPLTPQPLNVAGQGSPYFLTDKNLLMAVGCNVKAVM 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,242,885
Number of Sequences: 28952
Number of extensions: 322695
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)