Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120407.Seq
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    31   0.22 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.7  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   3.5  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   6.2  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   8.2  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 538 IHFANALVTANAGLVQANTMLNEARRETAHWPTAWRTLR 654
           +H   A++ AN GL+     L+  R E   WP    TLR
Sbjct: 543 LHLNRAMLRANNGLIPDEDKLDALRSEAYQWPFLLATLR 581


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 318 LITKEGVIQLIMKSKLPYAV 377
           L+ K+GV+ L+ K KLP++V
Sbjct: 542 LLVKDGVVHLVDKVKLPFSV 561


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 257 GYGIDPDSLYVVLYFLS 207
           GY +DPD +Y +L FLS
Sbjct: 808 GYKLDPDDVYNILSFLS 824


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 498 RLLAKSGRGQRKNYTFCQCVGDRQRRIGAS*HNVKRGAPRNGALAN--RMADIAQD--VI 665
           +L  +S R +R+ YT    + +     G    ++ + +PR+ + +N  R  D +++  + 
Sbjct: 212 KLYLESLREKRRTYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESIIF 271

Query: 666 AKPNNPQ 686
             PN P+
Sbjct: 272 TSPNTPE 278


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 677 VRFGYHVLRNVRHAVGQCAVSRRASFNIVLACTNP 573
           + +  HVL + R+A G+C+ + R+  N VL   NP
Sbjct: 45  IPYHLHVLDS-RYADGRCSAAMRSLSNYVLYKNNP 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,246
Number of Sequences: 5004
Number of extensions: 61548
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)