Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120407.Seq
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.076
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_20114| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)                  29   5.0  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = -3

Query: 328 LVMSTVCGCRYSGSPCLTTLSGAGVMV*TPTRCTSFC------IFCQH*LSQLVYNLHIL 167
           +VM TVC CRY  S C+ +L    V V   T C S C      + C    S+ V+++ + 
Sbjct: 246 VVMCTVCACRYVHSVCV-SLRSQCVRVIMYTVCVSLCAQCMRVVMCTVCASRYVHSVCVS 304

Query: 166 NCWRCL 149
            C +C+
Sbjct: 305 LCTQCM 310


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 64  IGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKT 225
           I +F+FG        ++   + ++KF AK+IA + K++   QAV ++  K Y T
Sbjct: 116 IPDFRFGCSDLYFVCLMTPKSTEIKFDAKEIADA-KWMETSQAVYLDKGKYYYT 168


>SB_20114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 222 NDVQRVGVYTITPAPDNVVKQGDPLYLQ 305
           N   R  +Y + PAP N    GDPL L+
Sbjct: 6   NVTNRDTIYKVLPAPSNSCSPGDPLVLE 33


>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
          Length = 662

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 228 VQRVGVYTITPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVEL-QAWLLEE 404
           V RV  Y +T     +V +G  LY      L   +GV    + S LPY V +   +++  
Sbjct: 499 VTRVLPYIVTRVLPYIVTRGVTLYRDQGLTLYRDQGVTPYTVTSVLPYIVTMVLPYIVTW 558

Query: 405 VIPQCCAR 428
           V+P    R
Sbjct: 559 VLPYIVTR 566


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 76   KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSE 237
            K GED F +  +L++G   V  V  D+ +S     CK+ ++      Y+  Y E
Sbjct: 2045 KIGEDAFQVFSILQKGKGVVVDVPGDVFNSFVESGCKREILERCFDMYR-AYKE 2097


>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1924

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 549 QCVGDRQRRIGAS*HNVKRGAPRNGALANRMADIAQD 659
           +C+G  Q+R+G S   +KR  P  G L + + D  Q+
Sbjct: 354 ECIGHVQKRVGNSLRKLKRDTP-GGKLTDALIDKLQN 389


>SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 599 NIVLACTNPALAVTNALAKCIIFS--LASARLC*QTPTFYL 483
           NIVLA  N  L+V  A    ++ +  L + RL  +TP+FYL
Sbjct: 26  NIVLATLNSILSVPTAFINALVIAAILTTPRL--RTPSFYL 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,559,201
Number of Sequences: 59808
Number of extensions: 525949
Number of successful extensions: 1186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)