Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120407.Seq
         (717 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L37368-1|AAA92859.1|  305|Homo sapiens RNA-binding protein protein.    30   9.5  
BC108316-1|AAI08317.1|  305|Homo sapiens RNA binding protein S1,...    30   9.5  
BC001838-1|AAH01838.1|  305|Homo sapiens RNA binding protein S1,...    30   9.5  
BC001659-1|AAH01659.1|  305|Homo sapiens RNA binding protein S1,...    30   9.5  
AF274003-1|AAL56665.1|  282|Homo sapiens splicing-related factor...    30   9.5  
AF247662-1|AAF72519.1|  228|Homo sapiens SR-related protein LD2 ...    30   9.5  
AF015608-1|AAC39791.1|  305|Homo sapiens SR protein protein.           30   9.5  

>L37368-1|AAA92859.1|  305|Homo sapiens RNA-binding protein protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 515 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRAAKRRTGQP 637
           WPRP  + +  P R  PP P W +      RR+   R   P
Sbjct: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP 282


>BC108316-1|AAI08317.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 515 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRAAKRRTGQP 637
           WPRP  + +  P R  PP P W +      RR+   R   P
Sbjct: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP 282


>BC001838-1|AAH01838.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 515 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRAAKRRTGQP 637
           WPRP  + +  P R  PP P W +      RR+   R   P
Sbjct: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP 282


>BC001659-1|AAH01659.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 515 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRAAKRRTGQP 637
           WPRP  + +  P R  PP P W +      RR+   R   P
Sbjct: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP 282


>AF274003-1|AAL56665.1|  282|Homo sapiens splicing-related factor
           RNPS1 protein.
          Length = 282

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 515 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRAAKRRTGQP 637
           WPRP  + +  P R  PP P W +      RR+   R   P
Sbjct: 219 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP 259


>AF247662-1|AAF72519.1|  228|Homo sapiens SR-related protein LD2
           protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 515 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRAAKRRTGQP 637
           WPRP  + +  P R  PP P W +      RR+   R   P
Sbjct: 165 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP 205


>AF015608-1|AAC39791.1|  305|Homo sapiens SR protein protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 515 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRAAKRRTGQP 637
           WPRP  + +  P R  PP P W +      RR+   R   P
Sbjct: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP 282


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,093,417
Number of Sequences: 237096
Number of extensions: 2472722
Number of successful extensions: 4306
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4306
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)