Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120407.Seq
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.31 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 28/108 (25%), Positives = 45/108 (41%)
 Frame = -2

Query: 629 QCAVSRRASFNIVLACTNPALAVTNALAKCIIFSLASARLC*QTPTFYLTLQSHHNLCPS 450
           +C+V R     I ++ + P+    N   KC       ++ C QT   Y   Q+H  LCP+
Sbjct: 331 RCSVKRE---KIKISVSYPSTETLNT--KCNTLERTPSK-CSQTSVHYSNGQTHSQLCPT 384

Query: 449 *RPARTCPCTALRNHLLQQPRLQFHSVRELALHN*LDNTLLGDEHCVR 306
             P  T        HL      +  S R  +  N  ++ ++GDE  +R
Sbjct: 385 --PRST--------HLKVSGINRVGSTRRPSRRNSCESQMMGDEMSLR 422


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 611  AAKRRTGQPHGGH 649
            A  R+TG  HGGH
Sbjct: 1922 APSRQTGSGHGGH 1934


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 303 QPHTVLITKEGVIQL 347
           +PHT L+T++ +++L
Sbjct: 127 RPHTYLVTRQKLLEL 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,640
Number of Sequences: 438
Number of extensions: 4279
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)