Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120407.Seq
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19190.1 68415.m02239 light-responsive receptor protein kinas... 31 0.76
At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low s... 28 5.4
At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low s... 28 5.4
At4g01640.1 68417.m00213 hypothetical protein 28 5.4
At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein / ... 28 5.4
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con... 28 5.4
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 27 9.4
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 27 9.4
>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
senescence-responsive receptor-like serine/threonine
kinase, putative (SIRK) similar to light repressible
receptor protein kinase [Arabidopsis thaliana]
gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
Protein kinase domain and PF00560: Leucine Rich Repeat
Length = 876
Score = 31.1 bits (67), Expect = 0.76
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +3
Query: 219 QNDVQRVGVY---TITPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVEL-Q 386
++DV +GV IT P + + +++ H I G I+ I+ +L ++
Sbjct: 754 KSDVYSLGVVLLEVITGQPAIASSKTEKVHISDHVRSILANGDIRGIVDQRLRERYDVGS 813
Query: 387 AWLLEEVIPQCCARASTRRPSRWTQIMV*LK 479
AW + E+ C S +RP+ +Q+++ LK
Sbjct: 814 AWKMSEIALACTEHTSAQRPT-MSQVVMELK 843
>At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low
similarity to SP|Q92989 Pre-mRNA cleavage complex II
protein Clp1 {Homo sapiens}
Length = 368
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 225 DVQRVGVYTITPAPDNVVKQGDPL---YLQPHTVLI 323
D +R +Y ITP P+N+V++ D L Y+Q T L+
Sbjct: 315 DTERGILYVITPVPENLVEKVDLLLQGYIQLPTCLL 350
>At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low
similarity to SP|Q92989 Pre-mRNA cleavage complex II
protein Clp1 {Homo sapiens}
Length = 368
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 225 DVQRVGVYTITPAPDNVVKQGDPL---YLQPHTVLI 323
D +R +Y ITP P+N+V++ D L Y+Q T L+
Sbjct: 315 DTERGILYVITPVPENLVEKVDLLLQGYIQLPTCLL 350
>At4g01640.1 68417.m00213 hypothetical protein
Length = 300
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -2
Query: 377 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSRGYGID 243
+S REL + N LD+ L E QV W DH W Y ID
Sbjct: 185 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 228
>At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein /
fasciclin domain-containing protein contains Pfam
profile PF02469: Fasciclin domain
Length = 445
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 591 HNVKRGAPRNGALANRMADIAQDVIAKPNNPQLLHSL 701
HN+ APRN AL + + + + +P N + L SL
Sbjct: 71 HNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSL 107
>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
contains Pfam PF00646: F-box domain; contains weak hit
to TIGRFAM TIGR01640 : F-box protein interaction domain;
weakly similar to self-incompatibility (S-) locus F-box
(GI:29420811) [Prunus mume]
Length = 391
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -2
Query: 377 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSRGYGID 243
+S REL + N LD+ L E QV W DH W Y ID
Sbjct: 276 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 319
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
cysteine endopeptidase precursor CysEP GI:2944446 from
[Ricinus communis]
Length = 361
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 668 GY-HVLRNVRHAVGQCAVSRRASFNIVLACTNPA 570
GY + R +RH G C ++ AS+ + + TNP+
Sbjct: 317 GYIRMQRGIRHKEGLCGIAMEASYPLKNSNTNPS 350
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 216 IQNDVQRVGVYTITPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVELQAWL 395
I + QR G ITP DN +K+G+ + L+ + +E I +++ S+ YA +W
Sbjct: 52 IHKEFQRKG---ITPFIDNEIKRGESIGLE--IIHAIRESKIAIVLLSR-NYA--SSSWC 103
Query: 396 LEEVI 410
L+E++
Sbjct: 104 LDELV 108
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,935,670
Number of Sequences: 28952
Number of extensions: 340923
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -