Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120406.Seq
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 30 0.40
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 30 0.40
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.2
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 5.0
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 6.6
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 6.6
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 25 8.7
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 8.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 8.7
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 8.7
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 29.9 bits (64), Expect = 0.40
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 590 GSARLRKRAPETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGNN 730
G +++ KRA E+ L +AD+++ ++ S HS A+ ++G N
Sbjct: 447 GGSQIEKRANESNNLQREIADLSEQIVELESKRNDLHS-ALLEMGGN 492
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 29.9 bits (64), Expect = 0.40
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 593 SRFSVASSHNHFVGKQNERSVASAKSALAP 504
S FS + SHNH Q E+S +++K ++ P
Sbjct: 537 SPFSKSKSHNHHPSSQVEKSTSNSKGSMLP 566
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 317 LITKSGVIQLIMKSKLPYAIELQEWLL 397
L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 202 STSTASTNRRLSMPTKSRPCSR*RGKAGRPAVFAPTHSAHYQI 330
S+S+ S++R S T R S + + RP VF T +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -3
Query: 705 RLWHSCGLLGLAITSCAMSAMRLASCAVSGARFRNLAEPFQRRVEPQSFRWQ 550
R W S L L +C M RL +F N RRVE + F WQ
Sbjct: 1140 RGWSSVATLSL--DTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFPWQ 1189
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +2
Query: 467 VIAKIDDLTQKLTVPTQIWRKQPIAHFVCQRNDCGSTRR*NGSARLRKRAPETAQLANRM 646
++A +L Q++ P++H++ N G ++ + AR+RK R+
Sbjct: 221 IMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRL 280
Query: 647 AD 652
AD
Sbjct: 281 AD 282
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 674 WLSRLAQCPPCGWPAAPFPARVFAILPS--RFSVASSHN 564
W + + CG PA P+P+ ++ + P R S+ S+++
Sbjct: 479 WHQEVQRVGFCGVPAEPYPSSLYYLQPGVLRSSIESAYS 517
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 343 LNHARFGNEHCVWVQIQRVALLCHAIWSMVWIWSACSNVDLYLPSTW 203
L+ + FG +W + R L C +W V W V L + S W
Sbjct: 123 LSRSSFGTWGSLWPILNRSVLAC--VWYGVQAWIGGECVVLMIRSIW 167
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 120 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 245
GDE V+ D S V+ + ++ GKY+ TF H D
Sbjct: 48 GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -1
Query: 650 PPCGWPAAPFPARVFAI----LPSRFSVASSHNHFVGKQNERSVASAKSALAP 504
PP W + F ++ F LPSR S + + KQNE +++ AL P
Sbjct: 686 PPRTWHSPDFTSKSFEPIERKLPSRISEVTEDSIDEDKQNEVDPSTSARALPP 738
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 589 VSASRRATIISLANKMSDRL--LPPNLRWH 506
V+ RR + ISLAN++S L PP+ R H
Sbjct: 683 VTEPRRISAISLANRVSQELGGNPPSARSH 712
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 546 LFANEMIVARRDAETARQDCE 608
+FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,813
Number of Sequences: 5004
Number of extensions: 66945
Number of successful extensions: 195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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