Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120406.Seq
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0110 - 5371536-5372882                                           31   0.98 
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    29   3.0  
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445...    29   3.0  
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906...    29   3.9  
01_06_1094 - 34478538-34478624,34478860-34478931,34479154-344792...    29   3.9  
11_04_0191 - 14692104-14692484                                         28   6.9  
03_05_0830 + 28034179-28035492                                         28   9.1  
01_06_1510 - 37859664-37861319                                         28   9.1  

>10_02_0110 - 5371536-5372882
          Length = 448

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = -3

Query: 339 ITPDLVMSTVCGCKY----SG-SPCFATLSGAWSGFGRHAQTSICTCRRRGHVLPVHNLH 175
           I+PD  +S +   +Y    +G S C+    G+  G  R  Q S+CT R R H L VH   
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378

Query: 174 ILNC-WRC 154
            +N  W C
Sbjct: 379 AMNLRWFC 386


>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 545 FVCQRNDCGSTRR*NGSARLRKRAP 619
           FVC R  C   RR  G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454


>02_01_0599 -
           4455151-4455915,4455999-4456098,4456176-4456222,
           4456566-4456612,4457299-4457461,4458013-4458042
          Length = 383

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +2

Query: 335 VIQLIMKSKLPYAIELQEWLL--EEVIPQV--LCTGKYAPAVEMDTNDVIAKIDDLTQKL 502
           V+ ++   +  + +EL+E     E ++ Q+      ++AP+VE    +V A I+ +T+K+
Sbjct: 268 VMAILKNRREKFTLELKELQRKRENLLAQMGDPSANRHAPSVEHSLAEVAAHIEAVTEKI 327

Query: 503 TVPTQIWRK 529
            +  + W+K
Sbjct: 328 IMEEEKWKK 336


>11_03_0026 -
           9057965-9058234,9059410-9059522,9059612-9059802,
           9060606-9060720,9061781-9061907,9062915-9062990,
           9064247-9064365,9065430-9065593,9065666-9065779,
           9065966-9066065,9066276-9066340,9068175-9068253,
           9069513-9069659,9069904-9070161,9070657-9070852,
           9071179-9071402,9072531-9072554
          Length = 793

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 337 HARFGNEHCVWVQIQRVALLCHA 269
           H  FG++H + VQ+Q  A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225


>01_06_1094 -
           34478538-34478624,34478860-34478931,34479154-34479222,
           34479312-34479422,34480390-34480528,34480590-34480705,
           34480821-34480968,34481058-34481215,34481654-34481827,
           34482592-34483056
          Length = 512

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 638 WPAAPFPARVFAI-LPSRFS 582
           WPAAP P RV+   +PSRF+
Sbjct: 106 WPAAPAPLRVYVYEMPSRFT 125


>11_04_0191 - 14692104-14692484
          Length = 126

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 573 RRDAETARQDCENAR-RKRRSWPTAWRT 653
           RR + TA   C   R R+RRS PT WR+
Sbjct: 10  RRSSVTAHGGCGKQRWRQRRSRPTRWRS 37


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
 Frame = +2

Query: 371 AIELQEWLLEEV--IPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKL---TVPTQI-WRKQ 532
           AIEL   +L  V  I +    GKY   +  DT   +  +DD  + L    V T I W   
Sbjct: 268 AIELSAEILANVKFIQEKKLIGKYFEEISQDTGKYVFGVDDTLKTLEMGAVETLIVWENL 327

Query: 533 PIAHFVCQRNDCGST 577
            +  +V + +  G T
Sbjct: 328 DVNRYVLKNSATGET 342


>01_06_1510 - 37859664-37861319
          Length = 551

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 301 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 393
           AP H  H+Q++R S      +ALRHR  R A
Sbjct: 24  APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,088,994
Number of Sequences: 37544
Number of extensions: 506842
Number of successful extensions: 1744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1744
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)