Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120406.Seq
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.1  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   7.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.3  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +1

Query: 322 YQIWRDSTDNEVQIALRHRITRMAFGG 402
           Y +WR++  +   +  R    ++A GG
Sbjct: 399 YMVWRETISSTATLGFRVEGIKLAHGG 425


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +1

Query: 322 YQIWRDSTDNEVQIALRHRITRMAFGG 402
           Y +WR++  +   +  R    ++A GG
Sbjct: 314 YMVWRETISSTATLGFRVEGIKLAHGG 340


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +1

Query: 322 YQIWRDSTDNEVQIALRHRITRMAFGG 402
           Y +WR++  +   +  R    ++A GG
Sbjct: 633 YMVWRETISSTATLGFRVEGIKLAHGG 659


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -3

Query: 639 LASCAVSGARFRNLAEPFQRRVEPQSFRWQTK*AIGCFRQICVGTVNFCVRSSILAITSF 460
           L + AVS   F  L  PF+  V  Q + WQ    I   R     T ++    S+L I +F
Sbjct: 72  LFNLAVSDLLFLILGLPFELSVFWQQYPWQWGLGICKLRAYVSETSSYV---SVLTIVAF 128


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = -2

Query: 679 GFGYHVLRNVRHAVGQLRRFRRAFSQSCRAVSASRRATIISLANKMSDRLLPPNLRWHRQ 500
           GF   ++ NV+     + + R+  ++     S+ +R +I+  A ++S R+   + R   Q
Sbjct: 72  GFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQ 131


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 216 CRRRGHVLPVHNLHILNCWRCPWPQ 142
           CR + HV  +H+  ++  +R P  Q
Sbjct: 148 CRPKIHVFSLHDNKLITMYRFPQNQ 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,936
Number of Sequences: 438
Number of extensions: 4711
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)