Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120406.Seq
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    31   0.82 
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    30   1.9  
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain...    29   4.4  
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain...    29   4.4  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    29   4.4  
At5g59500.1 68418.m07457 expressed protein                             28   5.8  
At4g37060.1 68417.m05248 patatin, putative similar to patatin-li...    28   7.6  

>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 649 RHAVGQLRRFRRAFSQSCRAVSASRRATIISLANKMSDRL--LPPNL 515
           R  + +L R     SQ  RA SASR A IISL  K++     LPP+L
Sbjct: 308 RQEMARLAREHEVMSQE-RAASASRDAAIISLIQKITGHTIQLPPSL 353


>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +2

Query: 347 IMKSKLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVPTQIWR 526
           I+KSK P    ++EW+ ++++     TG      +  T D  +++ +  ++  VP     
Sbjct: 17  ILKSKAPAVKWIKEWVPQDIV----ATGGKCHLHKWVTEDTFSRLKEKEKEPDVPEPEPE 72

Query: 527 KQPIAHFVCQRNDCGST 577
                 F+C  + CG T
Sbjct: 73  PTTEILFLCSYDGCGKT 89


>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 870

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 60  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 200
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 822

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 60  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 200
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At3g57300.1 68416.m06378 transcriptional activator, putative similar
            to transcriptional activator SRCAP [Homo sapiens]
            GI:5106572; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1507

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 544  MSDRLLPPNLRWHRQFLRQIVN 479
            +++RLL   LRW RQFL ++VN
Sbjct: 1012 VAERLLFSILRWERQFLDELVN 1033


>At5g59500.1 68418.m07457 expressed protein
          Length = 396

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 647 PCGWPAAPFPARVFAILPSRFSVASS 570
           P  W  APFP R  + +P R S++SS
Sbjct: 56  PSIWSCAPFPVRKGSWVPPRCSISSS 81


>At4g37060.1 68417.m05248 patatin, putative similar to patatin-like
           latex allergen [Hevea brasiliensis][PMID:10589016];
           contains patatin domain PF01734
          Length = 414

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 275 AKQGDPLYLH-PHTVLITKSGVIQLIMKSKLPYAIELQEWLLEEVIPQV-LCTGKYAPAV 448
           A Q +  YL      L   +  + L  KS L   I+L E +L   + Q+ + TG Y PA 
Sbjct: 313 ALQSEDKYLRIDDDTLEGDASTLDLSTKSNLENLIKLGEKMLTNRVMQMNIDTGTYEPAA 372

Query: 449 EMDTND 466
           E   ND
Sbjct: 373 ENINND 378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,981,248
Number of Sequences: 28952
Number of extensions: 372197
Number of successful extensions: 1047
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)