Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120405.Seq
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 34 0.029
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 32 0.089
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 27 4.4
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 4.4
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 5.9
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 26 7.8
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 26 7.8
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 26 7.8
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 26 7.8
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 33.9 bits (74), Expect = 0.029
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 594 KEGDYELDPKLKKDAVEVFDADFEKVD---FDNGAAAAGLINKWVENKTNERI 743
K+G L+PK+ + V + +++EK+D FD+ GL++ + N+ N +
Sbjct: 1277 KDGSGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETTEGLLSSYCSNEWNREV 1329
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 32.3 bits (70), Expect = 0.089
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Frame = -2
Query: 548 FQF*RHSRE**ANLSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQ 369
++ RHS E ++ S++IPR+++ + K S+ S D+ D F LS
Sbjct: 946 YELKRHSLEDSKSIISALIPRIIDK-------ITKSSEESQSSTDDDDRRIFEILSFLYV 998
Query: 368 NFAENLVIAE--DKAFE-SILRTGFFISNSVNSINK-TLANISIIINPLVYYDSSIIFTS 201
+E + A + I + FF+S VNS + L +I+ N L+ I+F
Sbjct: 999 GSVATSYFSETAEMAIDFGIAQVEFFLSTVVNSFSAFALVYFAILANSLLEPSEDILFIG 1058
Query: 200 TEENKI 183
K+
Sbjct: 1059 NYGEKL 1064
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 298 IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTD 459
I++P+L+ +I K++A+ NEL S PL AE+ ++G D
Sbjct: 48 IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEFYFKKGSVGEKD 94
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 570 NVANKIYIKEGDYELDPKLKKDAVEVFDADFEKV 671
+ ++ Y+K+G +EL + D V D DF+ V
Sbjct: 1256 STSDNFYLKQGGFELLDTIITDFSNVMDPDFDDV 1289
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 674 VNFFKICIKYLDSV-LLKFWVELIVTLLDVY 585
V F+ C K + + + FW+EL+ TLL VY
Sbjct: 1101 VPLFEQCTKEVSAEDVTNFWLELVFTLLLVY 1131
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2
Query: 752 EIFNAFIGFIFNPFVY*AGGCGSVIEVNFFKICIKYLDSVLLKF 621
EI A I FI + A CG ++ NF + I Y+D VL KF
Sbjct: 17 EIDEACIQFIKSQIEGIARACGPRMQANFEGVLIPYVD-VLGKF 59
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 565 VTPFIDFNFDDTAENDERICHHP*YLGLSIVL 470
+TP DF++DD+ ND + +HP + L I +
Sbjct: 222 LTPVKDFHYDDSPVND--VEYHPHHTNLYIAV 251
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 290 SVNSINKTLANISIIINPLVYYDSSIIFTST 198
S + K LA+ S I +PL SSI+F +T
Sbjct: 372 SSKQMKKQLADTSSITSPLCLNTSSIVFNAT 402
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 316 SMDSKALSSAITKFSAKFCNELDKKKNVVS 405
S DSK+L + F++K C E+DKK +++
Sbjct: 10 SCDSKSLG--VDDFTSKRCREIDKKALLIT 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,455
Number of Sequences: 5004
Number of extensions: 63688
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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