Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120405.Seq
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 42 8e-04
11_02_0014 - 7352619-7352918,7353173-7353418 38 0.008
11_01_0767 + 6438648-6438809,6439146-6440000 36 0.031
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 36 0.041
11_02_0012 - 7346282-7347136,7347234-7347593 35 0.071
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 35 0.094
11_02_0011 - 7337618-7338496,7338596-7338991 34 0.12
05_06_0044 - 25150322-25151260 32 0.66
01_01_1152 + 9170628-9171899 31 1.5
01_06_0887 + 32733300-32734565 30 2.7
02_04_0632 + 24614659-24615528,24615636-24616133 29 4.7
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841... 29 6.2
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 28 8.2
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 41.5 bits (93), Expect = 8e-04
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +3
Query: 558 GVTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVDF-DNGAAAAGLINKWVENKTN 734
G AN +++ + L + + + A+ V F D A IN+W E+ T
Sbjct: 96 GPKVRFANGVWV-DAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFESATA 154
Query: 735 ERIKDLLSEAASIRLRVWFWSHALYFKGTWQT 830
RIKD L + A R +ALYFKG W++
Sbjct: 155 GRIKDFLPKDAVDRATPAVLGNALYFKGDWES 186
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 38.3 bits (85), Expect = 0.008
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 705 INKWVENKTNERIKDLLSEAASIRLRVWFWSHALYFKGTW 824
IN+WV TN+ I ++L + + RL +A+YFKG W
Sbjct: 90 INEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKW 129
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 36.3 bits (80), Expect = 0.031
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 597 EGDYELDPKLKKDAVEVFDADFEKVDFDNGAAAAGL-INKWVENKTNERIKDLLS-EAAS 770
+ Y L P + V + VDF N A IN WV T I +++ E+ S
Sbjct: 25 DASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPESQS 84
Query: 771 IRLRVWFWSHALYFKGTW 824
+ R +A+YFKG W
Sbjct: 85 VDTR-HVVGNAIYFKGEW 101
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 35.9 bits (79), Expect = 0.041
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 687 AAAAGLINKWVENKTNERIKDLLSEAASIRLRVWFWSHALYFKGTW 824
A A +N WVE T+ IK++L + +ALYFKG W
Sbjct: 211 AEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAW 256
Score = 33.1 bits (72), Expect = 0.29
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 687 AAAAGLINKWVENKTNERIKDLLSEAASIRLRVWFWSHALYFKGTW 824
A G +N WV+ T+ IK++ + + ++ALYFKG W
Sbjct: 463 AEVLGQVNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAW 508
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 35.1 bits (77), Expect = 0.071
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 705 INKWVENKTNERIKDLLSEAASIRLRVWFWSHALYFKGTW 824
INKWV TN+ I+++L + + +A+YFKG W
Sbjct: 128 INKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKW 167
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 34.7 bits (76), Expect = 0.094
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 687 AAAAGLINKWVENKTNERIKDLLSEAASIRLRVWFWSHALYFKGTW 824
A A +N WV+ T+ IK++L + +ALYFKG W
Sbjct: 3 AEVASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAW 48
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 609 ELDPKLKKDAVEVFDADFEKVDFDNGAAAAGL-INKWVENKTNERIKDLLSEAASIRLRV 785
EL P + A + A +F + INKWV TN+ I ++L + +
Sbjct: 107 ELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNKLIPEILPDGSVHVDTA 166
Query: 786 WFWSHALYFKGTW 824
+A+YFKG W
Sbjct: 167 LVLVNAIYFKGKW 179
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 379 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDD 507
+ KN+V SP S LAL+ G +ELL LG D
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLD 69
>05_06_0044 - 25150322-25151260
Length = 312
Score = 31.9 bits (69), Expect = 0.66
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 597 EGDYELDPKLKKDAVEVFDADFEKVDFDNGAAAAGLINKWVENKTNERIKDLLSEA 764
+ L+P A VF A N AAA IN+W ++T +KD+LS +
Sbjct: 6 DASLRLNPAFADTAASVFKAAVRSAG--NPAAARAEINEWFSSQTGGFVKDILSNS 59
>01_01_1152 + 9170628-9171899
Length = 423
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 612 LDPKLKKDAVEVFDADFEKVDF-DNGAAAAGLINKWVENKTNERIKDLLSEAASIRLRVW 788
L P+ A + A E DF A +N +V + T I+D+L + V
Sbjct: 131 LTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIRDVLPPNSVDSSTVV 190
Query: 789 FWSHALYFKGTW 824
++A++FKGTW
Sbjct: 191 VLANAVHFKGTW 202
>01_06_0887 + 32733300-32734565
Length = 421
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 564 TFNVANKIYIKEGDYELDPKLKK--DAVEVFDADFEKVDFDNGAAAAGLIN 710
TFN+ N+I ++ EL P+ K + ++ A F +G AGLIN
Sbjct: 123 TFNLPNRIQLEREALELAPEEKPLLHRLVIYTATLSSDPFMDGCVVAGLIN 173
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -2
Query: 503 SSVIPRLVNSSSCAGSVVPKVINASKYSA----DNGDD 402
++V P L+ +G+ PK+ NAS Y+A DNGDD
Sbjct: 71 TAVDPSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108
>02_05_0997 +
33382756-33382861,33383070-33383161,33383936-33384175,
33384820-33384900,33384974-33385113,33385462-33385622,
33385700-33385800,33385895-33385969,33386218-33386488,
33386657-33386697,33386922-33387004,33387100-33387189,
33387721-33387825,33388023-33388161,33388467-33388670,
33388837-33388908,33389189-33389273,33389374-33389480
Length = 730
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 289 LLEIKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGT-TDPA 465
L+E+ LSM +K SSA+ F+ KF + L S+E + GT T PA
Sbjct: 237 LVEVVRSSLSMMAKQWSSAMNLFNEKF-SALPSLIAAHGMESSSEDEFMSLLFGTRTSPA 295
Query: 466 -HEELLTSLG 492
H+ L++SLG
Sbjct: 296 LHQFLVSSLG 305
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = -2
Query: 725 IFNPFVY*AGGCGSVIEVNFFKICIKYLDSVLLKFWVELI----VTLLDVYFV 579
+ +PF+ A G + ++ F C +L +LLKFWV+L+ VT VYF+
Sbjct: 733 LISPFLVTANG---MFVIDLF--CTWFLGLLLLKFWVKLVHWTTVTPFLVYFI 780
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,161,897
Number of Sequences: 37544
Number of extensions: 355319
Number of successful extensions: 834
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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