Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120405.Seq
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      58   7e-09
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      47   2e-05
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      41   0.001
SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)                      31   1.2  
SB_2123| Best HMM Match : PKD_channel (HMM E-Value=0)                  31   1.2  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_9147| Best HMM Match : Sushi (HMM E-Value=0)                        29   6.3  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +3

Query: 573 VANKIYIKEGDYELDPKLKKDAVEVFDADFEKVDF-DNGAAAAGLINKWVENKTNERIKD 749
           +AN+++ + G +E+  + KK + E F A+   VD+  N   A   +N+WVE KT ++IK+
Sbjct: 89  MANRLFAQMG-FEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKN 147

Query: 750 LLSEAASIRLRVWFWSHALYFKGTW 824
           L+ E    +  +    +A+YFKG+W
Sbjct: 148 LIPEGMFNKDTILCLVNAVYFKGSW 172


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 570 NVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVDFDNGAAAAGL-INKWVENKTNERIK 746
           ++AN +++++ D+ +  +      + +DAD   VD+      A   +N+WVE +T ++I 
Sbjct: 51  SIANNLFLQK-DFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKIC 109

Query: 747 DLLSEAASIRLRVWFWSHALYFKGTW 824
           DL++      L      +A+YFKG W
Sbjct: 110 DLIAPGVFNMLTRLTLVNAIYFKGMW 135


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +3

Query: 573 VANKIYIKEGDYELDPKLKKDAVEVFDADFEKVDFDNGAAAAGL-INKWVENKTNERIKD 749
           + NKI+  + ++E+  +      E + ++  +VDF N A  A   +N WV  +T   IK+
Sbjct: 57  LVNKIWGHD-EFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKE 115

Query: 750 LLSEAASIRLRVWFWSHALYFKGTWQ 827
           L+       L      +A+YFKG W+
Sbjct: 116 LIPHGVINSLTRLIIVNAVYFKGVWK 141


>SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)
          Length = 678

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 311 TGFFISNSVNSINKTLANISIIINPLVYYDSSIIFTSTEENKILSP 174
           TG FIS S NS+N  +A  SI  +    + + +  T++    ++ P
Sbjct: 91  TGIFISVSSNSVNDDVAKSSISFSSQAQFSAKVTLTNSHLPSVIKP 136


>SB_2123| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 672

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -2

Query: 380 SSLQNFAENLVIAEDKAFESILRTGFFISNSVNSINKTLANISIIINPLVYYDSSIIFTS 201
           +S+++F + +   +D+    I ++   + NS+ S+  ++ +   +I P + +D+      
Sbjct: 507 ASIESFNDIISDGDDEMMSDIRKSVSDVRNSIISLRSSIEDEDFMIKPSIKWDTPTFVQQ 566

Query: 200 TEENK---ILSPPV 168
             +NK   I  PPV
Sbjct: 567 PAQNKPGSIFDPPV 580


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +3

Query: 603 DYELDPKLKKDAVEVFDADFEKVDFDNGAAAAGLINKWVENKTNERIKDLLSEAASIR 776
           DY++D KL  DA +  D +FE++  +N    A L  + ++ + N++  DL++    +R
Sbjct: 373 DYQVDYKLLLDAKKKLDTEFEELSKNNSEREAVL--RSLQQEKNKKDIDLMTLKEKLR 428


>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1656

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = -2

Query: 404 DTTFFFLSSSLQNFAENLVIAEDKAFESILRTG---FFISNSVNSINKTLANISIIINPL 234
           D +   +S+S+Q F   LV++      ++L       F+SNSV  +N ++ +   + N +
Sbjct: 534 DDSVISVSNSVQ-FVNYLVLSTIFVGNAVLFVDDSVIFVSNSVQFVNYSVLSTIFVGNSV 592

Query: 233 VYYDSSIIFTST 198
           ++ D S+I  S+
Sbjct: 593 LFVDDSVISVSS 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,443,551
Number of Sequences: 59808
Number of extensions: 412314
Number of successful extensions: 1066
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)