Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120404.Seq
         (806 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41679 Cluster: Uncharacterized 28.5 kDa protein in PK2...   157   2e-37
UniRef50_O10361 Cluster: Uncharacterized 26.5 kDa protein; n=7; ...    77   7e-13
UniRef50_Q22KY4 Cluster: Neurohypophysial hormones, N-terminal D...    35   2.8  
UniRef50_A0EAK7 Cluster: Chromosome undetermined scaffold_86, wh...    35   2.8  
UniRef50_P83119 Cluster: Probable G-protein coupled receptor Mth...    34   4.8  
UniRef50_UPI00006CB411 Cluster: hypothetical protein TTHERM_0047...    33   6.4  

>UniRef50_P41679 Cluster: Uncharacterized 28.5 kDa protein in
           PK2-LEF7 intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 28.5 kDa
           protein in PK2-LEF7 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 247

 Score =  157 bits (382), Expect = 2e-37
 Identities = 74/89 (83%), Positives = 77/89 (86%), Gaps = 3/89 (3%)
 Frame = +1

Query: 256 LCTYTAMLVGYMATFN---EFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMK 426
           LCTYTAMLVGYM TFN   E +YLQYW LLSFLMSV LNAPTLWT  KTTEAHEV+YEMK
Sbjct: 33  LCTYTAMLVGYMVTFNDSSELKYLQYWLLLSFLMSVVLNAPTLWTMLKTTEAHEVIYEMK 92

Query: 427 LFQAMYFSNVLLNYVVFSDNQMGTNFVLL 513
           LF AMYFSNVLLNYVVF DNQMGTNFV +
Sbjct: 93  LFHAMYFSNVLLNYVVFLDNQMGTNFVFV 121



 Score =  142 bits (344), Expect = 9e-33
 Identities = 64/90 (71%), Positives = 71/90 (78%)
 Frame = +3

Query: 492 GYKFCFVNNLIHCCVXXXXXXXXXXXXGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMG 671
           G  F FVNNLIHCCV            GHTMG YTDY+Y KSCYMVILFVSVMS TIVMG
Sbjct: 115 GTNFVFVNNLIHCCVLFMIFVELLILLGHTMGTYTDYQYVKSCYMVILFVSVMSVTIVMG 174

Query: 672 LECLKTKLVDSSLMFNSFMCALYIMIATVW 761
           LECLKTKL+D+SLMFN+F+CALYI+IA +W
Sbjct: 175 LECLKTKLIDNSLMFNAFVCALYIVIAIMW 204



 Score = 66.5 bits (155), Expect = 7e-10
 Identities = 28/32 (87%), Positives = 30/32 (93%)
 Frame = +2

Query: 161 MGLFTCCTKYTRLSTDTKVKFPYAALSYINVS 256
           MGLF CCTKYTRLSTDTK+KFPY ALSYINV+
Sbjct: 1   MGLFACCTKYTRLSTDTKMKFPYVALSYINVT 32


>UniRef50_O10361 Cluster: Uncharacterized 26.5 kDa protein; n=7;
           Nucleopolyhedrovirus|Rep: Uncharacterized 26.5 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 243

 Score = 76.6 bits (180), Expect = 7e-13
 Identities = 36/89 (40%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
 Frame = +1

Query: 256 LCTYTAMLVGYMA---TFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMK 426
           LC + A++ GY++   TF E ++LQYW +LS  ++  +NA TL+     TEAHE+VYE+K
Sbjct: 33  LCAFGAVVAGYLSAANTFVELQFLQYWLMLSLFVTGLINA-TLFLRQGKTEAHEIVYELK 91

Query: 427 LFQAMYFSNVLLNYVVFSDNQMGTNFVLL 513
           +  AMYF+N L+N+ + +  +   + VL+
Sbjct: 92  MLHAMYFANALVNHGLLATERSAVSAVLV 120



 Score = 72.1 bits (169), Expect = 1e-11
 Identities = 31/84 (36%), Positives = 46/84 (54%)
 Frame = +3

Query: 510 VNNLIHCCVXXXXXXXXXXXXGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKT 689
           V NL+HCC             GH +G Y+DYRYAK+CYM+ LFVS     I +G   +K+
Sbjct: 120 VANLVHCCALVLLFVELTVLLGHALGTYSDYRYAKACYMLALFVSAAVAVITVGASGMKS 179

Query: 690 KLVDSSLMFNSFMCALYIMIATVW 761
             +  +L+    +   Y+++A VW
Sbjct: 180 APLCDNLLVAVVLSIAYLLVAIVW 203



 Score = 44.0 bits (99), Expect = 0.005
 Identities = 18/35 (51%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
 Frame = +2

Query: 161 MGLFTCCTKYTRLSTDTKVKFPYAALSYINVS-CA 262
           M +F  C+ Y RLS +T+ +FP+AA+SY+NV+ CA
Sbjct: 1   MNVFKRCSGYIRLSNETRARFPFAAMSYVNVTLCA 35


>UniRef50_Q22KY4 Cluster: Neurohypophysial hormones, N-terminal Domain
            containing protein; n=1; Tetrahymena thermophila
            SB210|Rep: Neurohypophysial hormones, N-terminal Domain
            containing protein - Tetrahymena thermophila SB210
          Length = 1594

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = -2

Query: 718  LNIKLLSTSFVFKHSKPITIVKLITETNNITI*HDLAYR*SVYAPIVWPNRISN-SRNII 542
            +N  L + SF+F    PIT+V  IT+  N++         S+   +V PN+ +N   N+I
Sbjct: 1419 INYTLFAISFIFVFLAPITMVIFITKCKNLSDPQIQQQFGSLIGGLVVPNQQNNPENNLI 1478

Query: 541  KSTQQ*IKLLTKQNLYPFDCPKTPHNST 458
            K  Q   K+  + ++  F+      NST
Sbjct: 1479 KEHQN--KVAAEPDIINFNKNNKNENST 1504


>UniRef50_A0EAK7 Cluster: Chromosome undetermined scaffold_86, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_86,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 521

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 26/87 (29%), Positives = 45/87 (51%)
 Frame = -2

Query: 763 NHTVAIIMYKAHINELNIKLLSTSFVFKHSKPITIVKLITETNNITI*HDLAYR*SVYAP 584
           +H   II  K  +N+L IKL+  +F+ KH++    +++ +E N I +   + Y  S+ A 
Sbjct: 417 DHDFCIITMKQMLNQLLIKLM--TFLSKHNEDQISIEIFSEQNFIDL---IIYTKSIAAL 471

Query: 583 IVWPNRISNSRNIIKSTQQ*IKLLTKQ 503
            V   + +N R I+K      KL+  Q
Sbjct: 472 HVQLQKKTNFRKILKKIGPFDKLIVNQ 498


>UniRef50_P83119 Cluster: Probable G-protein coupled receptor
           Mth-like 12 precursor; n=1; Drosophila melanogaster|Rep:
           Probable G-protein coupled receptor Mth-like 12
           precursor - Drosophila melanogaster (Fruit fly)
          Length = 488

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 313 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLL-NYVVFSDNQ 489
           Y++Y+F +S  +  ++ +  LW  F +   HE  Y   ++    +    +   V+FS NQ
Sbjct: 280 YMKYFFSMSSYLWFSVVSFHLWELFTSLNRHEPQYRFLIYNTFVWCTAAIPTVVIFSMNQ 339

Query: 490 MGTN 501
           M  N
Sbjct: 340 MWEN 343


>UniRef50_UPI00006CB411 Cluster: hypothetical protein
           TTHERM_00475020; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00475020 - Tetrahymena
           thermophila SB210
          Length = 274

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 340 FLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYVVFSDNQMGTNFVLLTI 519
           FL+S+AL       A K    +E+ + + +FQ  Y  N+  NY +  +NQ     V + I
Sbjct: 4   FLLSLALVTGLASYALKNFSDYELYFPIAIFQISYAFNIYYNYAIRVENQNMNQGVFILI 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,220,510
Number of Sequences: 1657284
Number of extensions: 14641350
Number of successful extensions: 33387
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33378
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)