Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120404.Seq
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             30   1.9  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   3.4  
SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)                 28   7.7  
SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)                  28   7.7  

>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 200 STDTKVKFPYAALSYINVSCAPTRPCWWDTWQH--STNLNIYNTGFCCR 340
           S+    K P + +    +S + +  C+        S NLN Y+TG CCR
Sbjct: 338 SSSPSTKPPKSPIRLCRISLSTSPSCYQQISSQCPSLNLNCYSTGICCR 386


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 599 LSICQIMLYGYIVCFSYEFYYCY 667
           L  C    Y Y  C+ Y +YYCY
Sbjct: 467 LRYCYCYCYCYYYCYCYCYYYCY 489



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 608 CQIMLYGYIVCFSYEFYYCY 667
           C    Y Y  C+ Y +YYCY
Sbjct: 474 CYCYYYCYCYCYYYCYYYCY 493


>SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 401 ASVVLNA-VHKVGAFSATDIKNDNRNQYCKYSNSLNVAMYPTN 276
           A +V+N  +HK G  S   I+ D      KY    +VA+YPTN
Sbjct: 306 APIVINRELHKGGDRSCMHIELDITGSGIKYDAGDHVAVYPTN 348


>SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)
          Length = 269

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +1

Query: 286 YMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEV 411
           Y      F  L     LS ++SVA N   LWT F T   H V
Sbjct: 9   YQENLESFILLSVLSTLSGIVSVAGNFLVLWTIFHTKSLHVV 50


>SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)
          Length = 210

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 325 WFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNY 468
           W  + F+  +  N+P LW     T   EVV + +L  A    N ++ +
Sbjct: 127 WLFVLFINDLECNSPHLWKYVDDTTVSEVVLKGELSSAQGLVNDIIEW 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,178,444
Number of Sequences: 59808
Number of extensions: 514846
Number of successful extensions: 1330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)