Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120404.Seq
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ...    29   2.7  
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel...    29   4.8  
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel...    29   4.8  
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel...    29   4.8  
At2g45930.1 68415.m05711 expressed protein contains Pfam profile...    28   8.4  
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    28   8.4  

>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 304

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 167 LFTCCTKYTRLSTDTKVKFPYAALSYINVSCAPTRPCWWDTWQH 298
           L  CC   T L++ T V     ALS + +  +P++P W   + H
Sbjct: 242 LLLCCNILTCLTSHTSVLSSNLALSNLLLQSSPSQPLWLYLYLH 285


>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 710

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 313 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 471
           YLQ WF++ FL  + L    +W   +++   +V   +   QA+ F  VL+ Y+
Sbjct: 180 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 228


>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 313 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 471
           YLQ WF++ FL  + L    +W   +++   +V   +   QA+ F  VL+ Y+
Sbjct: 187 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 235


>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 313 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 471
           YLQ WF++ FL  + L    +W   +++   +V   +   QA+ F  VL+ Y+
Sbjct: 187 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 235


>At2g45930.1 68415.m05711 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 239

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -1

Query: 236 TQHRETSLLCRSITLCILCN--T*TNPFLILILVH--NSIDYIQMLTKVY 99
           T  R+ SL CR  TL +  +  T TNP+L+  L+H  + +D I + + ++
Sbjct: 12  TSLRKLSLRCRHSTLRMFSSSSTTTNPYLMFSLIHYGSCLDDIDVTSTIH 61


>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 391 TTEAHEVVYEMK-LFQAMYFSNVLLNYVVFSDNQMGTNFVL 510
           TTE   + +E + L Q  Y    L +YVVFSDN + ++ V+
Sbjct: 297 TTEYFTLDHEKRQLLQQSYNDPDLYHYVVFSDNVLASSVVV 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,357,935
Number of Sequences: 28952
Number of extensions: 330375
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)