Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120403.Seq
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    29   1.1  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    27   4.4  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   7.6  

>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -3

Query: 445 DRCTAPVKLPSWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILSTAHRFRPTE* 269
           D     + LPS + P    +   K+ ++F P+HH  + +  ++ +P   +T      T+ 
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTTTEAAANTKD 207

Query: 268 VMKQ*SSGFSATIARNDL 215
           + ++    +SA     DL
Sbjct: 208 IEEETMIEYSAQPVVRDL 225


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 633 ACGSQAFIATLLFDPSMSALPIIANKISP 719
           ACGS     TLL+DP +    I+  K+SP
Sbjct: 321 ACGSGK---TLLYDPPIEEFSILQTKVSP 346


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 547 LCVLNIWIKPAFAFCSTR 494
           LCV ++WIK A AF   R
Sbjct: 414 LCVTDVWIKKATAFSKRR 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,482,439
Number of Sequences: 5004
Number of extensions: 73997
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)