Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120403.Seq
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 1.1
01_06_0456 + 29521282-29522064 31 1.5
08_01_0799 + 7734031-7735102,7735453-7735475 30 2.6
03_04_0006 + 16257288-16259522 30 2.6
03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196 29 3.5
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.6
02_05_0726 - 31252210-31253166,31253667-31253840,31254320-312543... 29 4.6
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 4.6
06_03_1448 + 30235336-30236763 29 6.1
06_03_1443 + 30182018-30183445 29 6.1
06_03_1440 + 30166515-30167942 29 6.1
06_03_1437 + 30151030-30152457 29 6.1
06_03_1429 + 30100834-30102261 29 6.1
06_03_1425 + 30084383-30085810 29 6.1
06_03_1420 - 30053713-30055140 29 6.1
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.1
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 29 6.1
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 6.1
01_01_1195 - 9567023-9567789,9567871-9568120 29 6.1
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 8.0
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149... 28 8.0
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 20 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 166
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>01_06_0456 + 29521282-29522064
Length = 260
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -3
Query: 415 SWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 293
+W+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>08_01_0799 + 7734031-7735102,7735453-7735475
Length = 364
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -2
Query: 362 VSATSPLCTLGTKHRAPADI--IDRAPLPPNRVSNETMK*WFFSDDRAKRSPTYATPLMS 189
+S L T RA D+ + A P V +ET F SDD +K +P YAT M+
Sbjct: 70 ISVYLELLTKNCAVRAAYDLRLVKHATGLPMSVYSETTHRMFNSDDSSKFAPPYAT-FMN 128
Query: 188 PYNARLESS 162
N +E+S
Sbjct: 129 RSNLEMEAS 137
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 227 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 75
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196
Length = 240
Score = 29.5 bits (63), Expect = 3.5
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Frame = -2
Query: 560 AFAVPMRTEHLDQASFCLLLHARFLSSLSWP*DTCVIL*QMYRPSQTPLLAVSS-----N 396
A +V ++ + S +L+ R + S SW D CVI + +PS+ + +++
Sbjct: 82 ALSVVREIDNNVEGSTGMLVRCRVIFSNSWCEDRCVIAVVIPQPSEVVVREIATYWFEDQ 141
Query: 395 RITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMK*WFFSDDRAKR 219
R R A + T ++ + + II R P+ V+ + ++F D RA R
Sbjct: 142 RTCRIISRTPMEVAVREITTYWSEDQRTSRIISRTPM---EVAVREIATYWFEDQRASR 197
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 227 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 102
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>02_05_0726 -
31252210-31253166,31253667-31253840,31254320-31254364,
31254463-31254573,31254669-31254746,31255170-31255234,
31255358-31255733,31256891-31257035,31257308-31257462,
31259036-31259182
Length = 750
Score = 29.1 bits (62), Expect = 4.6
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Frame = -2
Query: 419 PLLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADI--IDRAPLP------PNRVSN 264
PLLA+ + I ++F ++ TS G H + AP P P+ +++
Sbjct: 84 PLLALPNTAIIKDFVGFCHIATTSSSPKTGQGHEPTTCFRPVLLAPSPLCLTRGPHTITH 143
Query: 263 ETMK*WFFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 117
+ + + SP Y P ++ N + S +T S P PK P
Sbjct: 144 QIEAPQADHVEDSVSSPKYVKPAVAKQNGEVVSRATKSDAPVSKPKVDP 192
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 581 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 688
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 420 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 283
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 420 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 283
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 420 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 283
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 420 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 283
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 420 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 283
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 420 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 283
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 420 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 283
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 348 TTLHAWNETPCARRYY 301
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 635 LWQPSVHSDVAF*SFDVGSSYHCEQNFAKRWIVHPSKGNVSWVR--PS*DRL 784
LW+ V S A S G+ C+ W +HP ++ VR P DRL
Sbjct: 1109 LWKVEVPSLTAIRSLSTGTVLGCQVEKHMNWYLHPEHVSILLVRLMPQLDRL 1160
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 356 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 445
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/65 (33%), Positives = 27/65 (41%)
Frame = -2
Query: 293 APLPPNRVSNETMK*WFFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPL 114
A L P R N W R R + A + R SSS+ S PA +P P P
Sbjct: 127 ARLFPGRTDNAVKNHWHVLMARRHREQSGA------FRRRKPSSSSASPAPAPAPPPPPQ 180
Query: 113 AVVSL 99
VV+L
Sbjct: 181 PVVAL 185
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 435 PPQSNSPPGSVLEPDHAGVLNGDE 364
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>02_04_0220 -
21014225-21014386,21014492-21014572,21014739-21014938,
21014999-21015157,21015248-21015377,21015520-21015673,
21015785-21015867,21015981-21016040,21016131-21016217
Length = 371
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 399 RGHCQEGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKAKAGLIQMFSTHRDCE 557
+GH +T A KNNAG L+ Q Q+ Q K GL +T RD +
Sbjct: 212 KGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL----ATERDVD 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,768,520
Number of Sequences: 37544
Number of extensions: 544860
Number of successful extensions: 1735
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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