Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120403.Seq
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48582-1|CAA88465.1|  490|Caenorhabditis elegans Hypothetical pr...    32   0.58 
Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U37430-1|AAB52673.1|  145|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    28   9.5  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    28   9.5  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z48582-1|CAA88465.1|  490|Caenorhabditis elegans Hypothetical
           protein F27E5.3 protein.
          Length = 490

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = -2

Query: 374 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMK*WFFSDDRAKRSPTYATPL 195
           T+   S TS          +P    D  P PP   S++  K     DD  K++P Y   +
Sbjct: 317 TSNVPSGTSEASITNPILHSPPSKFDNIPSPPKAFSDDLRK---SPDDDVKQNPQYGMDI 373

Query: 194 MSPYNARLESSSTGS 150
           +SP    ++SS  GS
Sbjct: 374 VSPVQL-VKSSDKGS 387


>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 781 PVSRRSNPAHVPF*WVNNPTLGEILF 704
           P+  R+N   +PF W+  P LG ILF
Sbjct: 113 PIHYRNNRRKIPFYWIIIPILGHILF 138


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 242  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 123
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 242  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 123
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>U37430-1|AAB52673.1|  145|Caenorhabditis elegans Hypothetical
           protein K09F5.4 protein.
          Length = 145

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 766 SNPAHVPF*WVNNPTLGEILFAMIGRADIEGSKSN 662
           S+PAH    WV+  ++GEIL    G+   EG   N
Sbjct: 97  SHPAHFNNKWVSTASMGEILLFESGKRRKEGEHVN 131


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/79 (21%), Positives = 33/79 (41%)
 Frame = -2

Query: 392 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMK*WFFSDDRAKRSP 213
           +T+E  T  S +A  P     TKHR    +++        ++ + +K     +   +R+P
Sbjct: 581 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 636

Query: 212 TYATPLMSPYNARLESSST 156
               P+  P   + E+  T
Sbjct: 637 ESTVPIGPPVEVKAEAIQT 655


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/79 (21%), Positives = 33/79 (41%)
 Frame = -2

Query: 392 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMK*WFFSDDRAKRSP 213
           +T+E  T  S +A  P     TKHR    +++        ++ + +K     +   +R+P
Sbjct: 577 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 632

Query: 212 TYATPLMSPYNARLESSST 156
               P+  P   + E+  T
Sbjct: 633 ESTVPIGPPVEVKAEAIQT 651


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -2

Query: 239 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 123
           +DD   R P + +     L  PY +   SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,376,836
Number of Sequences: 27780
Number of extensions: 424794
Number of successful extensions: 1098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)