Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120403.Seq
         (837 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.8  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   5.1  
At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi...    28   6.7  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    28   6.7  
At3g62370.1 68416.m07006 expressed protein                             28   8.8  

>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 206 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 96
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 438 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 322
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 907

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 521 ASFCLLLHARFLSSLSWP 468
           ASFC+L+HA   ++L WP
Sbjct: 105 ASFCILIHALVKANLFWP 122


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 778 VSRRSNPAHVPF*WVNNPTLGEILFAMIGRADIEGSKSNVAMNAWLPQ 635
           V RR +P  V      +P + + L+ ++  AD+ GS  NV M AW P+
Sbjct: 97  VYRRGSPGSV----YRSPKVFKRLWPVM-EADVNGSSHNVLMEAWKPR 139


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 423 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 328
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,613,567
Number of Sequences: 28952
Number of extensions: 411817
Number of successful extensions: 1122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)