Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120402.Seq
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    31   0.19 
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    29   1.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.2  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 615 SMSLMTLVNLFMQSH-FLYQAHLYLGLMLMCGFVLFDTQLILEK 743
           S+ L  L+  F+ S  F+  A    G ++ CG++LFDT  IL +
Sbjct: 186 SLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHR 229


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 706 DLYYSTHNLSLRNAEWEAKLCAHAL 780
           D +Y  H+L L+N   + KLC H L
Sbjct: 328 DYFYDVHSLLLKNLSSKIKLCNHIL 352


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
 Frame = -2

Query: 554 SSSREAYKYQGSAEQTVIMIDGSTTLTYSSRGPML-MPDVNPNPSR*PSRKLVFFPLSGV 378
           SSS  AY Y  + +        ++  TYS+ GP L   + +P  S   S          V
Sbjct: 264 SSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQISSTISSSSFIVESPSV 323

Query: 377 AINMSIRPAPTMADKNPAWNLVNIST*TPADAETHV 270
           A++ S     T A   PA N +   +  P D    +
Sbjct: 324 ALSTSSTTTITNA-STPAANTIISRSSKPTDTTNSI 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,838
Number of Sequences: 5004
Number of extensions: 66165
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)