Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120402.Seq
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    43   2e-04
03_01_0560 + 4162206-4162607                                           30   1.9  
04_04_0024 - 22216105-22217856                                         28   9.9  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +3

Query: 513 LGTTLVFVCFSAAAMLAERGSWXXXXXXXXXXXXSMS-LMTLVNLFMQSHFLYQAHLYLG 689
           +GT + F CF+ AA++A+R  +             +  L    ++F  S   +   +Y G
Sbjct: 125 VGTAIAFGCFTCAAIVAKRREYLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFG 184

Query: 690 LMLMCGFVLFDTQLILEKRRMG 755
           L++  G++++DTQ I+E+   G
Sbjct: 185 LLIFLGYMVYDTQEIIERAHHG 206


>03_01_0560 + 4162206-4162607
          Length = 133

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 310 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 459
           F  F  G   A+  A L L+L+A  D     +   G+L G  LT   S+G
Sbjct: 58  FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107


>04_04_0024 - 22216105-22217856
          Length = 583

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +1

Query: 673 LIFILASCSCADLYYSTHNLSLRNAEWEAKLCAHALELFMTLL 801
           L F+++SC+CA+L  ++  L  + +E+  ++ A+A    M+ L
Sbjct: 183 LSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSL 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,389,176
Number of Sequences: 37544
Number of extensions: 420085
Number of successful extensions: 795
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)