Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120402.Seq
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_25768| Best HMM Match : tRNA_int_endo_N (HMM E-Value=9.2)           28   7.7  

>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 243 LKMFRHINDDMRLCICWGLC*YV---YKIPSWIFIGHRWCWSNAHVNCHTR*WKEH*LT 410
           L M+   N+D+RLCI  G   Y+    +I  W  I  +W  ++   NC+    K++ +T
Sbjct: 375 LSMYLESNNDLRLCINNGYKNYLTQNLRIGQWNNICTQWRSTDGEYNCYINGEKKYGVT 433


>SB_25768| Best HMM Match : tRNA_int_endo_N (HMM E-Value=9.2)
          Length = 247

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +3

Query: 630 TLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLILEKRRMGSKA 764
           T+  L + +H +Y     +  + +   +++DT++I+ + R+GS A
Sbjct: 34  TMTQLRIGAHVVYDTEATITRIRLGAHIVYDTEVIITRIRLGSHA 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,115,493
Number of Sequences: 59808
Number of extensions: 506073
Number of successful extensions: 975
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)