Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120402.Seq
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z81449-6|CAB03764.2|  489|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z81449-5|CAB03762.2|  488|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain (...    28   8.9  
AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain (...    28   8.9  
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    28   8.9  

>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 595 VPPRNSQLPRSAS-IAAAEKHTNTRVVPSRQL 503
           +PPR+   PRS S +A + K + T V P R +
Sbjct: 103 IPPRSMIFPRSTSMVAESRKESTTAVAPKRSV 134


>Z81449-6|CAB03764.2|  489|Caenorhabditis elegans Hypothetical
           protein C46F11.5b protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 274 MSSLMWRNIFKMLTNWWFQSILKAVDKGLKIYCIHV 167
           +SS   R+I   L  W FQSI + +  G  +Y IH+
Sbjct: 67  LSSSNDRSIITHLLMWPFQSIFRTLSVGGSVYSIHL 102


>Z81449-5|CAB03762.2|  488|Caenorhabditis elegans Hypothetical
           protein C46F11.5a protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 274 MSSLMWRNIFKMLTNWWFQSILKAVDKGLKIYCIHV 167
           +SS   R+I   L  W FQSI + +  G  +Y IH+
Sbjct: 67  LSSSNDRSIITHLLMWPFQSIFRTLSVGGSVYSIHL 102


>AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.2 protein.
          Length = 133

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 642 LFMQSHFLYQAHLYLGLMLMCGFVLFDTQLILEKRRM 752
           +F+   FLY  +  LG +L   ++  D QLI+  RR+
Sbjct: 65  IFLNWQFLYIVYAVLGALLCMFYLAIDIQLIMGGRRV 101


>AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform c protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 382 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 495
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform a protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 382 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 495
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 382 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 495
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 129 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,026,269
Number of Sequences: 27780
Number of extensions: 376697
Number of successful extensions: 911
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)