Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120402.Seq
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47120.1 68418.m05809 Bax inhibitor-1 putative / BI-1 putativ...    56   4e-08
At4g17580.1 68417.m02628 Bax inhibitor-1 family protein / BI-1 f...    52   6e-07
At5g47130.1 68418.m05810 Bax inhibitor-1 family / BI-1 family si...    48   7e-06
At1g79360.1 68414.m09248 transporter-related low similarity to S...    30   2.1  
At5g01890.1 68418.m00108 leucine-rich repeat transmembrane prote...    29   4.7  

>At5g47120.1 68418.m05809 Bax inhibitor-1 putative / BI-1 putative
           SP:Q9LD45: Bax inhibitor-1 (BI-1) (AtBI-1). [Mouse-ear
           cress]             {Arabidopsis thaliana}
          Length = 247

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = +3

Query: 513 LGTTLVFVCFSAAAMLAERGSWXXXXXXXXXXXXS-MSLMTLVNLFMQSHFLYQAHLYLG 689
           +GT + FVCFSAAAMLA R  +              M L    ++F  S  +++  LY G
Sbjct: 124 VGTAIAFVCFSAAAMLARRREYLYLGGLLSSGLSMLMWLQFASSIFGGSASIFKFELYFG 183

Query: 690 LMLMCGFVLFDTQLILEKRRMG 755
           L++  G+++ DTQ I+EK  +G
Sbjct: 184 LLIFVGYMVVDTQEIIEKAHLG 205



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 27/87 (31%), Positives = 43/87 (49%)
 Frame = +1

Query: 247 KCFATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLL 426
           + + TL    V+++ G Y+ +      G L+ I   G M+ L++ P        RL  L 
Sbjct: 38  RVYLTLCCALVASAFGAYLHVLWNI-GGILTTIGCIGTMIWLLSCPPYEHQK--RLSLLF 94

Query: 427 GFGLTSGMSMGPLLEYVSVVDPSIIIT 507
              +  G S+GPL++    VDPSI+IT
Sbjct: 95  VSAVLEGASVGPLIKVAIDVDPSILIT 121


>At4g17580.1 68417.m02628 Bax inhibitor-1 family protein / BI-1
           family protein similar to SP|Q9LD45 Bax inhibitor-1
           (BI-1) (AtBI-1) {Arabidopsis thaliana}; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 247

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +3

Query: 513 LGTTLVFVCFSAAAMLAERGSWXXXXXXXXXXXXSMSLMTLVN-LFMQSHFLYQAHLYLG 689
           +GT + FVCFSAAAMLA R  +             +  + + + +F  S  + +  LY G
Sbjct: 126 VGTAVAFVCFSAAAMLATRREYLYHGASLACCMSILWWVQIASSIFGGSTTVVKFELYFG 185

Query: 690 LMLMCGFVLFDTQLILEKRRMG 755
           L++  G+++ DTQ+I EK   G
Sbjct: 186 LLIFVGYIVVDTQMITEKAHHG 207


>At5g47130.1 68418.m05810 Bax inhibitor-1 family / BI-1 family
           similar to SP|Q9LD45 Bax inhibitor-1 (BI-1) (AtBI-1)
           {Arabidopsis thaliana}
          Length = 187

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +3

Query: 513 LGTTLVFVCFSAAAMLAERGSWXXXXXXXXXXXXSMSLMT-LVNLFMQSHFLYQAHLYLG 689
           LGT ++F CFSA AMLA R  +              SL+T L N    +    +  +YLG
Sbjct: 68  LGTAVIFFCFSAVAMLARRREY---IYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLG 124

Query: 690 LMLMCGFVLFDTQLILEKRRMG 755
           L+L  G ++ +TQ I+EK   G
Sbjct: 125 LLLFVGCIVVNTQEIIEKAHCG 146



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 406 LRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIIT 507
           +R   LL FG+  G S+GP ++    +D SI+IT
Sbjct: 32  IRFSLLLLFGVLHGASVGPCIKSTIDIDSSILIT 65


>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +1

Query: 265 MMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTS 444
           M+T  S +  VY  +  RF  GF  A +G     ++++T   GK    R+G +  FG   
Sbjct: 157 MLTVFSPNIWVYAVL--RFVNGFGRATIGT--CALVLSTELVGKKWRGRVGIMSFFGFML 212

Query: 445 GMSMGPLLEYVS 480
           G    PL+ Y++
Sbjct: 213 GFLSLPLMAYMN 224


>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           (LRPKm1) - Malus domestica, EMBL:AF053127
          Length = 967

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 225 HQFVSILKMFRHINDDMRLCICW 293
           H+FVS   ++RH++ D  +C+ W
Sbjct: 761 HEFVSGGSLYRHLHGDESVCLTW 783


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,669,077
Number of Sequences: 28952
Number of extensions: 342381
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)