Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120401.Seq
         (785 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IKQ1 Cluster: Putative uncharacterized protein; n=1; ...    36   0.87 
UniRef50_O15645 Cluster: Programmed DNA degradation 2 protein; n...    35   2.7  
UniRef50_Q22A21 Cluster: Protein kinase domain containing protei...    33   8.1  

>UniRef50_Q8IKQ1 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 3455

 Score = 36.3 bits (80), Expect = 0.87
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 646  YKVNNSFF*FTN-NCPKVTLPTLIIVDSYIHRGVCRKKLKTHSFVLL 783
            YK NN +   +N       +P L+I+  YIHR +C KK K +S V +
Sbjct: 2893 YKNNNEYIDISNIKLLPCCIPILVILYKYIHRNICSKKEKNNSDVYI 2939


>UniRef50_O15645 Cluster: Programmed DNA degradation 2 protein; n=2;
           Tetrahymena thermophila|Rep: Programmed DNA degradation
           2 protein - Tetrahymena thermophila
          Length = 329

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 24/74 (32%), Positives = 36/74 (48%)
 Frame = -1

Query: 560 EPYSLKETITFKSICIDNQ*HFFVQMHRLPPLIIDDSYKTMTSEFTCVIQMRKKVKKHRL 381
           E Y+LK    + ++   N   + ++M R   + IDDSYK   +E   + QM K   KH  
Sbjct: 97  EIYNLKSIEKYANVLYTNIIRWRIEMQR-GQIPIDDSYKPNEAEIQQLKQMEKYADKHDY 155

Query: 380 NLE*CKTRMPLYRQ 339
           + E  K +M  Y Q
Sbjct: 156 DYE-MKKQMKQYEQ 168


>UniRef50_Q22A21 Cluster: Protein kinase domain containing protein;
           n=1; Tetrahymena thermophila SB210|Rep: Protein kinase
           domain containing protein - Tetrahymena thermophila
           SB210
          Length = 280

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -1

Query: 170 ENLMPLVINLMFGGQRIRKIHVDFVKEINKCYCTKIFYNIT*HYNIF 30
           E  + +++ LM  G  IR + +D +KEIN CY +KI  N    Y+ F
Sbjct: 39  EGTIKIILELMDFGS-IRNL-IDMLKEINYCYLSKILCNQKYQYHFF 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,615,872
Number of Sequences: 1657284
Number of extensions: 13209439
Number of successful extensions: 25681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25678
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)