Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120401.Seq
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13100.1 68416.m01640 ABC transporter family protein similar ...    29   3.5  
At2g18850.1 68415.m02196 SET domain-containing protein low simil...    29   4.6  

>At3g13100.1 68416.m01640 ABC transporter family protein similar to
           ATP-binding cassette transporter MRP8 GI:18031899 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1493

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 577 YLMQVLNRIL*RRRLHSNQSVLTINNIFLSKCTDC 473
           YLM    + L  +R +SNQ V+ +   F++K  +C
Sbjct: 328 YLMDTFVQYLNGQRQYSNQGVVLVTTFFVAKLVEC 362


>At2g18850.1 68415.m02196 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 448

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -2

Query: 436 RQSSRV--SYKCARK*KSIVSTSNNVKRVCLFIGKADYRCYGHSQICYLPLNFGTLFLQF 263
           ++ +RV  SY+C ++ K +    +N  +  L I + D   YG   I    L FG + L+ 
Sbjct: 136 KEKARVVDSYRCEKESKLVEWGQDNGVKTKLQIAQIDG--YGRGAIASEDLKFGDVALEI 193

Query: 262 LIKSLIHKRFFF 227
            + S+I + + +
Sbjct: 194 PVSSIISEEYVY 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,039
Number of Sequences: 28952
Number of extensions: 294324
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)