Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120400.Seq
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    26   0.37 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.85 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.0  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   2.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.0  

>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 146 PAGARRRLATDLTSATTPCVCEQIRQKA--SPLSKFR*HLQCSNNPVRHA 3
           P G     A +LT +T    CE     +  S    FR  +QCSN+P+R A
Sbjct: 22  PGGFVMEDANNLTQSTILTTCESNTDFSFGSKTIDFR-KIQCSNSPLRKA 70


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 359  VCAPEVDERAQPAVPEQCAPE 297
            V  PEVD+ +QP  P Q  P+
Sbjct: 1091 VVMPEVDKPSQPCEPGQYVPD 1111


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 134 RRRLATDLTSATTPCVCEQIRQKASPLSK 48
           R RL   +TSA TP V     ++  PL++
Sbjct: 272 RARLRKQITSAATPLVRSYAPERYPPLAQ 300


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 268 RAAGCARSSTSGAHCSGTAGCARSSTSGAHTGRT 369
           R A C   S  G    G  G   +S+ GA  GRT
Sbjct: 140 RPAACTPDSRVGYGSVGLVGGDPASSPGAAAGRT 173


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/36 (22%), Positives = 14/36 (38%)
 Frame = -2

Query: 566 NTCSMHVXXXXXXXXXGTRECAQVAARKQCAQPAVR 459
           N C + +           ++C  V  R +C  P V+
Sbjct: 228 NNCEIDMYMRRKCQECRLKKCLSVGMRPECVVPEVQ 263


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,611
Number of Sequences: 336
Number of extensions: 2258
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)