Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120400.Seq
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.02c |||ankyrin repeat protein, unknown biological role|S...    26   6.6  
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    25   8.7  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    25   8.7  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    25   8.7  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.7  

>SPAC105.02c |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 160 RLCALLLEHGADSLLTSRRRQRPASVNKSDRRRLHCQSLDSTCNA 26
           R+  +L+E GAD LLT+    RP  +   D   +   +L+    A
Sbjct: 102 RMVEMLMEVGADPLLTNNDGFRPIDLVPGDFHDVFASALEGPAPA 146


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 577 RCMRALTYF*RAYCTCCSHAADCTVLYDW 663
           RC +   +  ++ C CC + A  T  Y+W
Sbjct: 21  RCGKRSFHIQKSTCACCGYPAAKTRSYNW 49


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -2

Query: 377 TRAVRPVCAPEVDERAQPAVPEQCAPEVDERAQPAAREQCASQRYASSARS 225
           +R++ PV       + QP +PE+      + +    R++  S    ++ARS
Sbjct: 189 SRSISPVTEQPQSPKIQPVIPEKKEKSEKKESSMTLRKRSVSPSSQNTARS 239


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 577 RCMRALTYF*RAYCTCCSHAADCTVLYDW 663
           RC +   +  ++ C CC + A  T  Y+W
Sbjct: 21  RCGKRSFHIQKSTCACCGYPAAKTRSYNW 49


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 291 IYFWRALLGYRWLRAL 338
           I+FW A+L +RW  AL
Sbjct: 3   IWFWLAILVFRWWNAL 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,298
Number of Sequences: 5004
Number of extensions: 33752
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)