Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120400.Seq
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 33 0.24
01_06_1228 - 35541160-35541729 29 3.0
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 29 3.0
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 3.9
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 29 5.2
03_05_0146 - 21260967-21261055,21261464-21261568,21261851-212619... 29 5.2
03_05_0906 + 28671977-28672111,28672197-28672253,28672678-286728... 28 6.9
07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562... 28 9.1
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677... 28 9.1
01_06_0679 - 31127510-31127722,31129691-31129717,31129877-311302... 28 9.1
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 344 VDERAQPAVPEQCAPEVDERAQPAAREQCASQRYAS 237
+DERA P Q AP V +RA + +E+ + R AS
Sbjct: 765 IDERAPQMTPRQAAPSVTQRASASIQERISGARGAS 800
>01_06_1228 - 35541160-35541729
Length = 189
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Frame = +1
Query: 220 CILRALLAYRWLAHCSR-------AAGCARSSTSGAHCSGTAGCARSSTSGAHTGRTARV 378
C + L RW HC R S S +H + TA + SS +G A +
Sbjct: 45 CFVAVSLYLRWACHCHRYGRDTTPMPATTSSGFSSSHAAATAPGSASSVTGLDDATIASM 104
Query: 379 PLA 387
P+A
Sbjct: 105 PVA 107
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 29.5 bits (63), Expect = 3.0
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = -3
Query: 439 APEVDERAQVAAREQCAQPA--VREQCAQYARQK*MSARSQRYPSSARQK*MXXXXXXXX 266
A E ERA ARE+ A+ A +E+ A+ AR+ R+ + + AR++
Sbjct: 608 AAEARERAAAEARERAAKAAAEAKERVAEEARE-----RAAKAAAEARERAATEAREKAA 662
Query: 265 XXXXXSGTRAVRAVYTSEVDERAQVAALEQHVQSAR 158
RA +E RA+ AA+E+ AR
Sbjct: 663 AEARAKAERAAVDKVAAEARRRAERAAVERAAAEAR 698
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Frame = +1
Query: 310 CSGTAGCARSSTS-GAHTGRTARVPLAAR-TXXXXXXXXXXXXXXXXXXXCSRTAGCAHC 483
C G C + S G H G+ PL R T C T C
Sbjct: 309 CGGMLQCGKHSCERGCHAGKCGGCPLQGRRTCPCGKKDYPSLDCDAEAATCGST-----C 363
Query: 484 LRAATCAHSRVPLPA-RARLLQTCILHVLLACRC 582
+ C + P R ++TC L + +CRC
Sbjct: 364 EKVLGCGRHKCPERCHRGSCVETCRLVITKSCRC 397
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 247 RWLAHC---SRAAGCARSSTSGAHCSGTAGCARSSTSGAHTGRTARVP 381
RWL + + AAG + ++C G GC RSS+S + + A P
Sbjct: 330 RWLKNIKLVASAAGLIQEKYKESNCGG-GGCGRSSSSSSSSAEQAHQP 376
>03_05_0146 -
21260967-21261055,21261464-21261568,21261851-21261936,
21262144-21262253,21262370-21262474
Length = 164
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 244 YRWLAHCSRAAGCARSSTSGAHCSGTAGCARSSTSGAHTGRTARV 378
+R L CS GC+ SST+G G GC + R RV
Sbjct: 7 WRRLRRCSSYRGCS-SSTNGGGGRGVGGCVVLAQKATAYARVTRV 50
>03_05_0906 +
28671977-28672111,28672197-28672253,28672678-28672854,
28672935-28673021,28675339-28675403,28676914-28677010,
28677162-28677248
Length = 234
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -3
Query: 229 AVYTSEVDERAQVAALEQHVQSARLCALLLEHGADSLLTSRRRQRPAS-VNKSDRRRLHC 53
AV +ER +++A+ + + +A+ L + L Q P+S N+ D R L
Sbjct: 41 AVTARTAEEREKLSAISRRISAAKAKIKTLSQSEEPLTIVSPAQHPSSCTNQEDFRPLFH 100
Query: 52 QSLDSTCNAPIILFVT 5
D P I ++
Sbjct: 101 DKYDDNSGGPSIATIS 116
>07_03_1204 + 24855052-24855210,24855411-24855974,24856157-24856225,
24856304-24856426,24856733-24856864,24857143-24857266,
24857547-24857614,24857849-24857991,24858615-24858722,
24858826-24858901,24859442-24859578,24859660-24859819,
24859901-24860080,24860159-24860275,24860540-24860695,
24861209-24861379,24861479-24861591,24861669-24861792,
24861961-24862056,24862139-24862201,24862299-24862364
Length = 982
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 454 CSRTAGCAHCLRAATCAHSRVPLPARARLL 543
C+ +AGC +C++ TC L A +L
Sbjct: 929 CTSSAGCPNCIQTLTCGEYNEVLDKEAAIL 958
>06_01_0883 +
6768998-6769381,6769518-6769616,6769664-6769726,
6770883-6770931,6771338-6771405,6771463-6771715,
6772244-6772380,6772708-6772821,6773059-6773258,
6773367-6773561,6773650-6773812
Length = 574
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 434 WRAYCATARVPL--AARTACVPLPAHTLACRYLRALACF 544
W A A+A P AA AC+ L A LA L A ACF
Sbjct: 42 WGAARASAVAPALAAASAACLALSAMLLADAVLMAAACF 80
>01_06_0679 -
31127510-31127722,31129691-31129717,31129877-31130245,
31130340-31130396
Length = 221
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 616 CTCCSHAADCTVLYDW**R-RGRYRLVCGL 702
C CC A DCT Y R R RLVCGL
Sbjct: 35 CECCGMAEDCTPGYVRRVRARFEGRLVCGL 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,054
Number of Sequences: 37544
Number of extensions: 307278
Number of successful extensions: 1330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -