Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120400.Seq
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical
           protein R08C7.5 protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 374 RAVRPVCAPEVDERAQPAVPEQCAPEVDERAQPA 273
           + ++P+ A   ++ A+PAVP++  P     A+PA
Sbjct: 362 KEIKPIVAKITEKAAEPAVPKEVKPAKAATAKPA 395


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 32/134 (23%), Positives = 44/134 (32%), Gaps = 1/134 (0%)
 Frame = -2

Query: 650 TVQSAACEQHVQYARQ-K*VSARMQRHASNTCSMHVXXXXXXXXXGTRECAQVAARKQCA 474
           T Q A  +   Q A Q +  SA   +   + C   V            +C Q  A  QC 
Sbjct: 233 TCQQAVPQCQQQCAPQCQQPSAPQCQQCQSACQSPVVAPQIITLEVVPQCQQQCA-PQCQ 291

Query: 473 QPAVREQWRSMXXXXXXXXXXXXXXXXXXXXGTRAVRPVCAPEVDERAQPAVPEQCAPEV 294
           QPA  +  +                       +  V   C     + A P   EQCAP+ 
Sbjct: 292 QPAAPQCQQCQTTCQQFAPVCQQQCAPQCTLPSAPVCQQCQTSCQQFA-PVCQEQCAPQC 350

Query: 293 DERAQPAAREQCAS 252
            + A P   +QC S
Sbjct: 351 QQPAAPQC-QQCQS 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,573,267
Number of Sequences: 27780
Number of extensions: 224056
Number of successful extensions: 891
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)