Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120400.Seq
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   4.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 158 ALRSPAGARRRLATDLTS 105
           ALR+  GA  +LATD TS
Sbjct: 59  ALRTELGASTKLATDTTS 76


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 23/78 (29%), Positives = 32/78 (41%)
 Frame = -1

Query: 681 SPSASLPVVQHRAVGGMRATRAVCTSEVGERAHAAAREQHVQYARLKQASARR*RHARVC 502
           SP+ S P  QH       +  A  TS +     AAA   H Q  +   A+A     + V 
Sbjct: 63  SPTGSSP--QHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSMV- 119

Query: 501 AGSGTQAVRAASGTRAVA 448
            G G+ A  +A+   A A
Sbjct: 120 PGFGSTAASSAALAAAAA 137


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 683 YRPLRHYQS 657
           Y PLRHY+S
Sbjct: 137 YHPLRHYRS 145


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 722 RWVVRSSRPQTKRYRP 675
           RWV   SRP   RY P
Sbjct: 455 RWVSTMSRPFEVRYDP 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,453
Number of Sequences: 438
Number of extensions: 2339
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)