Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120400.Seq
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01180.1 68418.m00022 proton-dependent oligopeptide transport...    29   3.3  
At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5...    28   7.6  
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2...    28   7.6  
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2...    28   7.6  
At2g13960.1 68415.m01551 myb family transcription factor contain...    28   7.6  

>At5g01180.1 68418.m00022 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 570

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 294 YFWRALLGYRWLRALIYFWRAYWAHCSRTAG 386
           YF+  L G  +L  L+Y W A W    +T G
Sbjct: 537 YFFWLLAGLSFLNFLVYLWIAKWYTYKKTTG 567


>At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5)
           contains Pfam profile: PF00249 myb-like DNA binding
           domain; identical to cDNA putative c-myb-like
           transcription factor MYB3R-5 (MYB3R5)  GI:15375300
          Length = 548

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 362 PVCAPEVDERAQPAVPEQCAPEVDERAQPAAREQCAS 252
           PVC+PE +ER++  +  QC     E  QP A   C+S
Sbjct: 8   PVCSPEKEERSEMKIEIQCM----ENKQPLA-ASCSS 39


>At4g12780.1 68417.m02005 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 485

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = -1

Query: 657 VQHRAVGGMRATRAVCTSEVGERAHAAAREQHVQYARLKQASA 529
           VQ  AVG     R        +RAHA ARE+    AR K A A
Sbjct: 153 VQRAAVGKATDARERAERAAVQRAHAEARERAAAGARDKAAKA 195


>At4g12770.1 68417.m02004 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 909

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = -1

Query: 657 VQHRAVGGMRATRAVCTSEVGERAHAAAREQHVQYARLK----QASARR*RHARVCAGSG 490
           VQ  AVG +   R        +RAHA ARE+    AR K     A AR   +A V     
Sbjct: 570 VQRAAVGKVTDARERAERAAVQRAHAEARERAAAGAREKAEKAAAEARERANAEVREKEA 629

Query: 489 TQAVRAASGTRAVAQ 445
                 A+  RA A+
Sbjct: 630 KVRAERAAVERAAAE 644


>At2g13960.1 68415.m01551 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 150

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 362 PVCAPEVDERAQPAVPEQCAPEVDERAQPAAREQCAS 252
           PVC+PE +ER++  +  QC     E  QP A   C+S
Sbjct: 8   PVCSPEKEERSEMKIEIQCM----ENKQPLA-ASCSS 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,352,206
Number of Sequences: 28952
Number of extensions: 191427
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)