Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120399X.Seq
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   1.3  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.3  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.0  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   7.0  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   9.3  
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    25   9.3  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 315 LITKSGVIQLIMKSKLPYAIELQEWLL 395
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 200 STSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQI 328
           S+S+ S++R  S  T   T S  +  + RP VF  T  +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 179 IVNGQYVSTSTASTNRRLSMPTKSSTCS 262
           I  G Y STS +ST+   + P+ SST S
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTS 156


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 241 RHAQTSICTCRRRGHVLPVHNLHILN 164
           R A T +   R    +LPVH LH+ +
Sbjct: 776 RQAMTRLKGLRETNSILPVHQLHMFH 801


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 179 FTYFKLAGDVLGHKSDWLLITEHVS 105
           F Y   AGDV     DWLL    +S
Sbjct: 423 FAYINAAGDVSDTVFDWLLAISGIS 447


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 390 LLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLT 491
           +LEE + Q L     A  +  +T  +I KIDD+T
Sbjct: 491 ILEENVLQPLLVNISAIQLAAETTKMIMKIDDIT 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,535
Number of Sequences: 5004
Number of extensions: 49160
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)