Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120399X.Seq
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0110 - 5371536-5372882 30 1.3
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 29 1.8
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 2.3
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 29 3.1
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 28 4.1
04_01_0044 + 489486-490012,490903-491332 28 4.1
02_05_1333 - 35761405-35761822,35762551-35763155 28 5.4
01_06_1510 - 37859664-37861319 28 5.4
01_06_1367 - 36711738-36711774,36711962-36712686,36713217-367132... 27 7.1
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 23 8.0
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554... 27 9.4
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 27 9.4
>10_02_0110 - 5371536-5372882
Length = 448
Score = 29.9 bits (64), Expect = 1.3
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Frame = -2
Query: 337 ITPDLVMSTVCGCKY----SG-SPCFATLSGACAGFGRHAQTSICTCRRRGHVLPVHNLH 173
I+PD +S + +Y +G S C+ G+ G R Q S+CT R R H L VH
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378
Query: 172 ILN--WLA-----MSLATNLTGCSSPSTY 107
+N W + + G S+P Y
Sbjct: 379 AMNLRWFCERSGLLFFTIDAKGSSTPGAY 407
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 333 VIQLIMKSKLPYAIELQEWLL--EEVIPQV--LCTGKYAPAVEMDTNDVIAKIDDLTQKL 500
V+ ++ + + +EL+E E ++ Q+ ++AP+VE +V A I+ +T+K+
Sbjct: 268 VMAILKNRREKFTLELKELQRKRENLLAQMGDPSANRHAPSVEHSLAEVAAHIEAVTEKI 327
Query: 501 TVATQIWRK 527
+ + W+K
Sbjct: 328 IMEEEKWKK 336
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 335 HARFGNEHCVWVQIQRVALLCHA 267
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 311 CVWVQIQRVALLCHAIWSMCWIWSACSN 228
C+ V I V CH W +C WS N
Sbjct: 161 CILVLISSVGQSCHKNWVLCIAWSPDGN 188
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 226 TFEHADQIQHMLQIAWQSRATRCICTHTQCSL 321
+ EH I+H ++I WQ R +C C L
Sbjct: 255 SLEHHQAIRHAVKIGWQKYIKRYLCLAIFCML 286
>04_01_0044 + 489486-490012,490903-491332
Length = 318
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 280 CFATLSGACAGFGRHAQTSICTC 212
C T G C G G + TS C+C
Sbjct: 267 CSPTCKGLCVGCGENLNTSSCSC 289
>02_05_1333 - 35761405-35761822,35762551-35763155
Length = 340
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 280 CFATLSGACAGFGRHAQTSICTC 212
C T G C G G + TS C+C
Sbjct: 293 CSPTCKGLCLGCGENLNTSSCSC 315
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 299 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 391
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
>01_06_1367 -
36711738-36711774,36711962-36712686,36713217-36713284,
36714043-36714157
Length = 314
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -1
Query: 203 WTRIARSQFTYFKLAGDVLGHKSDWLLITEHVS*RERV 90
WTR + +F + V+ HK+ W + ++H++ + R+
Sbjct: 216 WTREEQLKFNALERLVPVMDHKTFWAVASKHLASKTRI 253
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 23.0 bits (47), Expect(2) = 8.0
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 249 PAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTG 428
P HA S + P H V++ +G+I L + L L + + +P CTG
Sbjct: 47 PLHALRSQRPEPAPASASHHDVVVVGAGIIGLSIARHLLLHTPLSVAVADAAVP---CTG 103
Score = 22.6 bits (46), Expect(2) = 8.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 234 ACRPNPAHAPDS 269
A PNP+HAP S
Sbjct: 7 ASAPNPSHAPSS 18
>01_06_0461 +
29553709-29554905,29555051-29555296,29555387-29555464,
29555557-29555657,29555745-29555940,29556022-29556147,
29556231-29556416,29556921-29557034,29557522-29557674,
29558287-29558475,29558568-29558645,29558728-29558853,
29558942-29559040,29559315-29559432,29559531-29559625
Length = 1033
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 187 RAIRVHVDGKYKSTFEHADQIQHMLQIAWQSRA 285
RA +H GK+ + F + I HM ++A ++A
Sbjct: 109 RAPTMHFSGKFDAGFTESQMIDHMQRLAAMNKA 141
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 331 PDLVMSTVCGCKYSGSPCFATLSGACAGFGRHAQTSICTCRRRG 200
P S+ S P L GAC G +H + S+ RRRG
Sbjct: 20 PSSSSSSSSSSSSSSLPSPRPLGGACGGRPQHGRRSLRAPRRRG 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,182,861
Number of Sequences: 37544
Number of extensions: 365776
Number of successful extensions: 1007
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -