Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120399X.Seq
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)                 30   1.4  
SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 29   1.8  
SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)                    28   4.1  
SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)                   28   5.4  
SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)                  27   7.2  
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              27   7.2  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.2  
SB_23094| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                27   9.5  
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)     27   9.5  

>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
 Frame = +3

Query: 249 PAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLC 422
           P +    + K   P   HP TVLI    +I L + + L   I LQ  L L+ +IP QVL 
Sbjct: 316 PLYKSSPLYKSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLI 375

Query: 423 -TGKYAPAVEMDTNDVIAKIDDLTQKLTVATQI 518
                AP   + T  V+  +  LT  L V T +
Sbjct: 376 PLHVLAPLQVVITLQVLTSLQVLT-SLQVLTSL 407


>SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)
          Length = 333

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 260 SMCWIWSACSNVDLYLPSTWTRI--ARSQFTYFKLAGDV 150
           SMC +++ C N+ L++P T+  I  A +   Y  L  D+
Sbjct: 258 SMCTVYNVCKNIPLHIPQTFLHINSAINPIVYALLKKDI 296


>SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 260 SMCWIWSACSNVDLYLPSTWTRI--ARSQFTYFKLAGDV 150
           SMC +++ C N+ L++P T+  I  A +   Y  L  D+
Sbjct: 121 SMCTVYNVCKNIPLHIPQTFLHINSAINPIVYALLKKDI 159


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 302 VQIQRVALLCHAIWSMCWIWSACS--NVDLYLPST 204
           V +QRV ++C  +W  C I+SA +   V +Y P T
Sbjct: 157 VTVQRVLIICGGMWVSCSIFSAVTLYGVHVYHPVT 191


>SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)
          Length = 391

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +3

Query: 285 DPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTND 464
           D + +     L+T+S  I L ++  + +A+    WL  ++   +L  GKY P+     N 
Sbjct: 115 DAMSIDTAASLLTRSQWISLNIQIVVYFAV----WLTFQLFDAILIPGKYMPSGSYQVNW 170

Query: 465 VIAKIDDLTQKLTVATQIW 521
           +I  I++    L + T  W
Sbjct: 171 LI--IENALMWLYIGTPCW 187


>SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)
          Length = 369

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 328 DLVMSTVCGCKYSGSPCFATLSGACAG 248
           D+VM TV GC+YS S  + +L   C G
Sbjct: 248 DVVMRTVRGCRYSDS-AWMSLCAQCVG 273


>SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)
          Length = 129

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 325 LVMSTVCGCKYSGSPCFATLSGACAGFGRHAQTSICTCR 209
           +VM  VC C+Y  S C       CA   R    ++C CR
Sbjct: 65  VVMCAVCACRYVRSVCLL----LCAQCLRVVICAVCACR 99



 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 325 LVMSTVCGCKYSGSPCFATLSGACAGFGRHAQTSICTCR 209
           +V+  VC C+Y  S C +     CA   R    ++C CR
Sbjct: 90  VVICAVCACRYVRSVCVS----LCAQCLRVVMCAVCACR 124


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 184  ERAIRVHVDGKYKSTFEHADQIQHMLQIAWQ 276
            +RAI VHVDG Y    +    +  +L++  Q
Sbjct: 1059 QRAIEVHVDGSYDRAEQQVKDVMDVLKVQEQ 1089


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 204 RRRQVQIDV*ACRPNPAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSK 359
           RRR +Q D+   R  P   P   A  G P ++ PH       G   L +K K
Sbjct: 536 RRRHLQNDILNGRKVPEEKPSETATNGPP-FICPHANCGRSFGARHLYLKHK 586


>SB_23094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 349 IIS*ITPDLVMSTVCGCKYSGSPCFATLSGACAGFGRHAQTS 224
           ++S   PDLV+S+    +Y GSP F T  G      ++AQ S
Sbjct: 285 VVSAKKPDLVVSSSGVAEYKGSP-FVTSVGQITAMLKNAQIS 325


>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1931

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 369 AIELQEWLLEEVIPQVLCTGK 431
           AI + +W L+ VIP+ LCT K
Sbjct: 420 AIPVDQWNLDYVIPKPLCTTK 440


>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 278  AGRPAVFAPTHSAHYQIWRDSTDNEVQIALRHRITRMAFGGGHSSSAMH 424
            A + +VF P+ S+H + W D + ++  I  + R++R       SS + H
Sbjct: 1557 ANKKSVFRPSPSSHTKNWADFSPSD-NITKKARLSRRKRSEAFSSESDH 1604


>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
          Length = 915

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 142 WPRTSPASLKYVNCERAIRVHV 207
           W R  P S +Y  CE  IR++V
Sbjct: 736 WRRALPLSKEYCACENTIRIYV 757


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,498
Number of Sequences: 59808
Number of extensions: 405917
Number of successful extensions: 903
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)