Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120399X.Seq
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine re...    29   2.7  
U43283-3|AAC69024.2|  880|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astaci...    28   4.8  
Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily as...    27   8.4  

>AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 60 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/71 (18%), Positives = 36/71 (50%)
 Frame = -1

Query: 299 QIQRVALLCHAIWSMCWIWSACSNVDLYLPSTWTRIARSQFTYFKLAGDVLGHKSDWLLI 120
           ++ R+AL+   +++   +WS  +++D   P     I    FT+   + D++     ++L+
Sbjct: 228 KLTRLALIYCFLYTGILMWSVITSIDSNFPFLPAFIVNHNFTFLTYSSDIMTLSLPYILL 287

Query: 119 TEHVS*RERVF 87
               + ++++F
Sbjct: 288 AFDSNIQKQIF 298


>U43283-3|AAC69024.2|  880|Caenorhabditis elegans Hypothetical
           protein T25G12.6 protein.
          Length = 880

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 411 QVLCTGKYAP-AVEMDTN-DVIAKIDDLTQKLTVATQI 518
           +V+  G   P A  +DT  DV+ K DDLT   T++TQI
Sbjct: 837 KVIIVGLQLPDATHLDTLCDVLLKWDDLTNTETISTQI 874


>U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astacin
           protease protein 4 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 296 IQRVALLCHAIWSMCWIWSACSN---VDLYLPSTWTRIARSQF 177
           IQR +L+  AI++ CW  S  +N   +D  +P T T +  + F
Sbjct: 4   IQRYSLVFCAIFATCWTASVVNNKQVIDTSVPQTETTLNDADF 46


>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 163 SLKYVNCERAIRVHVDGKYKSTFEHADQIQHML-QIAWQ---SRATRCICTHTQCSLPN 327
           SLK V+  + + V +DG+YK        +++ + Q+AW    +  TR +    + S PN
Sbjct: 102 SLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRKVAEKDEISPPN 160


>U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 151 protein.
          Length = 785

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 242 TKSSTCSR*RGKAGRPAVFAPTHSAHYQIWRDSTDNEVQIA 364
           TK    S  RG+ G   +    HS H  I +D+  N++++A
Sbjct: 26  TKGEITSENRGREGVKQLTRSAHSTHRTISKDARRNQLKMA 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,108
Number of Sequences: 27780
Number of extensions: 296346
Number of successful extensions: 802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)