Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120399X.Seq
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02790.1 68415.m00222 calmodulin-binding family protein very ...    28   3.4  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    28   4.5  
At4g37060.1 68417.m05248 patatin, putative similar to patatin-li...    28   4.5  
At4g25320.1 68417.m03643 DNA-binding protein-related contains Pf...    28   4.5  
At1g77060.1 68414.m08972 mutase family protein similar to carbox...    28   4.5  
At1g70420.1 68414.m08102 expressed protein                             28   4.5  
At5g43490.1 68418.m05317 hypothetical protein similar to unknown...    27   6.0  
At2g26340.1 68415.m03160 expressed protein                             27   6.0  

>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
           similarity to SP|P12036 Neurofilament triplet H protein
           {Homo sapiens}; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 636

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 185 NGQYVSTSTASTNRRLSMPTKSSTCSR*RG--KAGR--PAVFAPTHSAHYQI 328
           NG   S +T  ++RR S+P K     +  G  ++GR  P+  APT SA  +I
Sbjct: 472 NGNVASENTKPSDRRASLPAKIENHHQDDGLTQSGRKIPSYMAPTASAKARI 523


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 184 ERAIRVHVDGKYKST-FEHADQIQHMLQIAWQSRATRCICTHTQCSLP 324
           E AI   +  KYK+  F H + + H L    + R   C C +   SLP
Sbjct: 77  EDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREILCDCNNDCYSLP 124


>At4g37060.1 68417.m05248 patatin, putative similar to patatin-like
           latex allergen [Hevea brasiliensis][PMID:10589016];
           contains patatin domain PF01734
          Length = 414

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 273 AKQGDPLYLH-PHTVLITKSGVIQLIMKSKLPYAIELQEWLLEEVIPQV-LCTGKYAPAV 446
           A Q +  YL      L   +  + L  KS L   I+L E +L   + Q+ + TG Y PA 
Sbjct: 313 ALQSEDKYLRIDDDTLEGDASTLDLSTKSNLENLIKLGEKMLTNRVMQMNIDTGTYEPAA 372

Query: 447 EMDTND 464
           E   ND
Sbjct: 373 ENINND 378


>At4g25320.1 68417.m03643 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 404

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 203 TSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAP 304
           T  A+T   L+MPT++++  + + K GRP  + P
Sbjct: 64  TENAATPFSLTMPTENTSAEQLKKKRGRPRKYNP 97


>At1g77060.1 68414.m08972 mutase family protein similar to
           carboxyvinyl-carboxyphosphonate phosphorylmutase
           GB:O49290 from [Arabidopsis thaliana]; similar to
           carboxyphosphonoenolpyruvate mutase (GI:47149)
           [Streptomyces hygroscopicus]; contains Prosite PS00161:
           Isocitrate lyase signature
          Length = 339

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 249 PAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKS 356
           P H PD + + G  L +HP T L   +  +  ++K+
Sbjct: 256 PLHTPDELKEMGFHLIVHPLTALYASTRALVDVLKT 291


>At1g70420.1 68414.m08102 expressed protein
          Length = 272

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 185 NGQYVSTSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQIW 331
           NG   ++ST+ST  RLS   KSS   + + K  +      T SAH +++
Sbjct: 187 NGSSSTSSTSSTAARLSGVVKSSEKGKEKTKTDKKKDKMRTKSAHEKLY 235


>At5g43490.1 68418.m05317 hypothetical protein similar to unknown
           protein (gb|AAF20218.1)
          Length = 131

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 237 CRPNPAHAPDSVA--KQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWLL 395
           C P+P  A   V   + G+P    PH  L   + ++ +  +  LP   + QEWLL
Sbjct: 33  CPPSPLAATMKVKVKENGEPSAKPPHPDLKYLNQILHVPTRELLPEIDDDQEWLL 87


>At2g26340.1 68415.m03160 expressed protein
          Length = 230

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 327 SGVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDL 488
           S    ++MKS+L  A+   + LL+ V  QVL  GK    V    ++  A  DDL
Sbjct: 165 SNATVVLMKSQLGTALTALDSLLQTVPSQVLDKGKAMVEVYRSASEEDAGSDDL 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,469,127
Number of Sequences: 28952
Number of extensions: 274977
Number of successful extensions: 707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)