Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120398X.Seq
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    68   6e-13
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    58   5e-10
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    57   1e-09
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    31   0.11 
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    29   0.25 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.3  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   3.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   4.1  
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc...    25   7.2  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   7.2  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    24   9.5  

>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 68.1 bits (159), Expect = 6e-13
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
 Frame = +3

Query: 3   LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQ-QSTSFQLPTELE 179
           LQRMFQDI +S+++ E F +   + +    +IDFS  VL +  WP    + +F LP EL 
Sbjct: 499 LQRMFQDISLSQEITEAFWQLPQSRAG---NIDFSALVLGTSFWPLSPNNVNFHLPEELV 555

Query: 180 RSVHRFTTFYSSQHSGRKLNWLYNMARG 263
                F  +Y S H+GRKL+WL+++++G
Sbjct: 556 PLYEGFQNYYYSCHNGRKLSWLFHLSKG 583



 Score = 52.0 bits (119), Expect = 4e-08
 Identities = 24/52 (46%), Positives = 33/52 (63%)
 Frame = +2

Query: 293 YTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNAKLLV 448
           Y  + ST+QM VLL YN   S+T  +L + TG+  DFL  +L I L AK+L+
Sbjct: 597 YVFQVSTYQMGVLLLYNHRDSYTYEELAKITGLSTDFLTGILNIFLKAKVLL 648


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 58.4 bits (135), Expect = 5e-10
 Identities = 26/80 (32%), Positives = 45/80 (56%)
 Frame = +3

Query: 3   LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
           L+ MF+D+ +SK+   +FR   A  +   LH D  + VLS   WP    +  +LP ++++
Sbjct: 465 LEGMFRDVNISKEFTSSFRHSKAAHN---LHRDLYVNVLSQAYWPSYPESHIRLPDDMQQ 521

Query: 183 SVHRFTTFYSSQHSGRKLNW 242
            +  F  FY S+  G+K++W
Sbjct: 522 DLDCFEKFYLSKQVGKKISW 541


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 56.8 bits (131), Expect = 1e-09
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
 Frame = +3

Query: 3   LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQST---SFQLPTE 173
           L+ MF D+ +S++L + ++ + A  S +P  +D ++ +L+S  WP   S        P  
Sbjct: 507 LEGMFNDMNLSQELLQEYKHNSALQSAKPA-LDLNVSILASTFWPIDLSPHKIKCNFPKV 565

Query: 174 LERSVHRFTTFYSSQHSGRKLNWLYNM 254
           L   + +FT FY S+H+GRKL W  +M
Sbjct: 566 LLAQIDQFTDFYLSKHTGRKLLWYPSM 592


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 142 WKGHE-PDDSTWMLKSMCRGCSEL 74
           W+G++ P D+TW  ++ C GC +L
Sbjct: 104 WEGYDDPSDNTWSSEADCSGCKQL 127


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 142 WKGHE-PDDSTWMLKSMCRGCSEL 74
           W+G++ P D+TW  +  C GC EL
Sbjct: 199 WEGYDDPSDNTWNDEEDCAGCLEL 222


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 204 FYSSQHSGRKLNWLYNMARGNS 269
           FY  QH G+++ W Y  A+ +S
Sbjct: 284 FYRDQHLGKRIGWYYTAAQISS 305


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 130 EPDDSTWMLKSMCRGCSELF 71
           +PDD +WML   C GC + F
Sbjct: 125 KPDDGSWMLG--CDGCEDWF 142


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 182  LRAPVHHVLLVAT--LRAQAELALQHGKGELLTNCFKNRY-TLEASTFQMAVL 331
            ++A   H + + T  + AQ    +     ELLTNCF N Y  L     QMA++
Sbjct: 1240 VKATTKHFVFLLTDFMSAQTVYQIDIQVKELLTNCFYNVYENLSNHEKQMALV 1292


>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 138

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +3

Query: 27  GVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELERSVHRFTTF 206
           G+ K+   N R+    S    L   FS+  LSS   P  +S ++ L    E S  R    
Sbjct: 69  GLLKNNASNLRRRADYSESDRL---FSLSSLSS---PHTRSPAYDLDDSTETSRRRKRKN 122

Query: 207 YSSQHSGRK 233
            S  H GR+
Sbjct: 123 ESDSHEGRR 131


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 341 NDNTSWTVRQLEQHTGIKGD 400
           +D+++ T+ Q  QHTG +GD
Sbjct: 51  DDDSTLTLDQYAQHTGAQGD 70


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 121 DSTWMLKSMCRG 86
           +STW L +MCRG
Sbjct: 225 NSTWTLSNMCRG 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.129    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,539
Number of Sequences: 5004
Number of extensions: 29641
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)