Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120398X.Seq
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1339 + 32760424-32760584,32762428-32764462 66 9e-12
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 66 1e-11
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 63 1e-10
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 60 1e-09
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 59 2e-09
08_01_0471 - 4147170-4149207,4150535-4150692 58 3e-09
02_05_0737 - 31328473-31330513,31331015-31331184 57 8e-09
05_05_0356 - 24373879-24374469 31 0.57
10_08_0070 + 14637290-14637766,14639215-14639261,14640043-146401... 29 1.3
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062... 28 3.1
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 28 4.0
11_01_0675 - 5508815-5511277 27 7.1
02_05_0961 - 33103024-33103555,33107323-33107432,33107577-331077... 27 7.1
01_06_0456 + 29521282-29522064 27 7.1
07_03_1520 + 27415266-27415507,27415608-27415722,27415761-274158... 27 9.3
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 27 9.3
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 27 9.3
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 66.5 bits (155), Expect = 9e-12
Identities = 30/88 (34%), Positives = 49/88 (55%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF D+ S D ++F +++ ++ P S+Q+L++GSWP Q T +LP E+
Sbjct: 461 LEGMFNDLKTSHDTMQSFYANLSGDTDSPT---ISVQILTTGSWPTQPCTPCKLPPEIVD 517
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMARGN 266
+F FY H+GR+L W NM +
Sbjct: 518 ISEKFRAFYLGTHNGRRLTWQTNMGNAD 545
Score = 35.1 bits (77), Expect = 0.027
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2
Query: 254 GKGELLTNCFKNRYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLN 433
G ++ R+ L ST+QM VL+ +N T +EQ TGI L + LQ L
Sbjct: 542 GNADIKATFGGRRHELNVSTYQMCVLMLFNSADGLTYGDIEQATGIPHADLKRCLQSLAC 601
Query: 434 AK 439
K
Sbjct: 602 VK 603
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF+DI +SK++NE+F++ ++ P I+ S+ VL++G WP +LP EL
Sbjct: 544 LEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVKLPHELNV 603
Query: 183 SVHRFTTFYSSQHSGRKLNW 242
F FY S++SGR+L W
Sbjct: 604 YQDIFKEFYLSKYSGRRLMW 623
Score = 31.5 bits (68), Expect = 0.33
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 284 KNRYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNAKLLV 448
K + L S FQ VL+ +ND + +++ TGI+ L + LQ L K+ V
Sbjct: 638 KGKKELAVSLFQSVVLMLFNDAQKLSFLDIKESTGIEDKELRRTLQSLACGKVRV 692
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 62.9 bits (146), Expect = 1e-10
Identities = 25/84 (29%), Positives = 51/84 (60%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
++ M +DI ++K+ +F ++++N+ E ID ++ VL++G WP +++ LP E+ +
Sbjct: 453 MEGMLKDITLAKEHQSSFEEYVSNNPESNPLIDLNVTVLTTGYWPTYKNSDINLPLEMVK 512
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNM 254
V F +Y S RKL W++++
Sbjct: 513 CVEVFKEYYRSDKQHRKLTWIFSL 536
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/88 (30%), Positives = 47/88 (53%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
++ M D+ V++D F + +A E ID ++ VL++G WP ++ LP E+ +
Sbjct: 477 MEGMVTDLTVARDHQTKFEEFVAAHQELNPGIDLAVTVLTTGFWPSYKTFDINLPAEMVK 536
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMARGN 266
V F FY ++ RKL W+Y++ N
Sbjct: 537 CVEVFKEFYQTRTKHRKLTWIYSLGTCN 564
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/88 (30%), Positives = 47/88 (53%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
++ M D+ V++D F + ++ SE I ++ VL++G WP +S LP E+ +
Sbjct: 483 MEGMVTDLTVARDHQAKFEEFISTHSELNPGIALAVTVLTTGFWPSYKSFDINLPAEMVK 542
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMARGN 266
V F FY ++ RKL W+Y++ N
Sbjct: 543 CVEVFKEFYQTRTKHRKLTWIYSLGTCN 570
>08_01_0471 - 4147170-4149207,4150535-4150692
Length = 731
Score = 58.0 bits (134), Expect = 3e-09
Identities = 29/84 (34%), Positives = 42/84 (50%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF D+ S D + F + + P S+Q+L++GSWP Q + LP E+
Sbjct: 460 LEGMFNDLKTSHDTTQRFYAGTPDLGDAPT---ISVQILTTGSWPTQPCNTCNLPPEILG 516
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNM 254
F FY H+GR+L W NM
Sbjct: 517 VSEMFRGFYLGTHNGRRLTWQTNM 540
Score = 33.1 bits (72), Expect = 0.11
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 287 NRYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNAK 439
+++ L ST+QM VL+ +N + R +EQ T I L + LQ L K
Sbjct: 553 SKHELNVSTYQMCVLMLFNSADCLSYRDIEQTTAIPSADLKRCLQSLALVK 603
>02_05_0737 - 31328473-31330513,31331015-31331184
Length = 736
Score = 56.8 bits (131), Expect = 8e-09
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF D+ S+D +F + S E + +L++GSWP Q LPTE+
Sbjct: 464 LEGMFTDMKTSQDTMIDF--YAKKSEELGDGPTLDVHILTTGSWPTQPCPPCNLPTEILA 521
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNM 254
+F T+Y HSGR+L W NM
Sbjct: 522 ICDKFRTYYLGTHSGRRLTWQTNM 545
Score = 35.5 bits (78), Expect = 0.020
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 290 RYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNAK 439
++ L ST+QM VL+ +N T + +EQ T I L + LQ L K
Sbjct: 559 KHELNVSTYQMCVLMLFNSTDGLTYKDIEQDTAIPASDLKRCLQSLACVK 608
>05_05_0356 - 24373879-24374469
Length = 196
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 313 VPDGGAAAVQRQHLVDGPPAGAAHRHQRGLPHTG 414
VP GAAA++R+ +G A HR +RG+P G
Sbjct: 32 VPAAGAAALRRE---EGEAPAAVHRGRRGVPRIG 62
>10_08_0070 +
14637290-14637766,14639215-14639261,14640043-14640106,
14641022-14641440,14641821-14642055
Length = 413
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 268 PHQLLQEQVHAGGEHVPDGGAAAVQRQHLVDGPPAGAA 381
P + HAG DGG +RQH DG PA A
Sbjct: 102 PESASAPRAHAGFTSTRDGGGRRGRRQHGGDGGPAAMA 139
>04_04_0294 +
24204563-24204748,24205531-24205620,24205980-24206211,
24207180-24207457,24207576-24207647,24208054-24208295,
24208781-24209197,24209296-24209497,24209624-24209738,
24209821-24209906,24210235-24210354,24210431-24210519,
24210588-24210669,24211072-24211263,24211546-24211668
Length = 841
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Frame = +3
Query: 12 MFQDIGVSKDLNENFRKHMANSSE---------QPLHIDFSIQVLSSGSWPFQQSTSFQL 164
M D+ SK N N + ++ +S+ + H ++SS WP Q+ +
Sbjct: 587 MLNDLIDSKRTNSNIKTSLSKTSQTVGTVQEETELSHEVLDATIISSNFWPPIQTEDLTV 646
Query: 165 PTELERSVHRFTTFYSSQHSGRKLNWLYNM 254
P +++ + + + + RKL W N+
Sbjct: 647 PASVDQLLSDYAKRFHQIKTPRKLLWKKNL 676
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 116 HLDAEVYVQGLLRAVCHVLPEVLVQVLRHANV 21
H D + Y+Q L A+ PEVLV+ LR +V
Sbjct: 828 HTDDDEYIQSLKEALKVKSPEVLVRTLRAESV 859
>11_01_0675 - 5508815-5511277
Length = 820
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 100 SMCRGCSELFAMCFLKFSFKSFDTPMSWNI 11
S+C G S+LF C FS KS P W +
Sbjct: 329 SVCNGNSDLFCDCMESFSQKS---PQDWEL 355
>02_05_0961 -
33103024-33103555,33107323-33107432,33107577-33107707,
33107779-33107870,33108210-33108337,33108658-33108723,
33108815-33108907,33108979-33109128,33109553-33109578,
33109674-33109826,33110140-33110228,33110335-33110418,
33110564-33110598,33110702-33110842,33111045-33111128,
33111208-33111215,33111590-33111746
Length = 692
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 280 LQEQVHAGGEHVPDGGAAAVQRQHLVDGPPA 372
+Q+++HA + + D GAAA + + PPA
Sbjct: 561 IQDRLHALADQITDHGAAASSPSIVPESPPA 591
>01_06_0456 + 29521282-29522064
Length = 260
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 292 VHAGGEHVPDGGAAAVQR---QHLVDGPPAGAAHRHQRGLPHTGTS 420
VH GG+ DGGA++ + + P RH + PH +S
Sbjct: 140 VHLGGQLPSDGGASSPWQPPPHFCIISPAMATLRRHHQVFPHISSS 185
>07_03_1520 +
27415266-27415507,27415608-27415722,27415761-27415815,
27415862-27417849,27418161-27418589
Length = 942
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 110 DAEVYVQGLLRAVCHVLPEVLVQVLRHANVLE 15
+ EV + GL +CHV+PE + L H + E
Sbjct: 813 ELEVLI-GLSSQICHVVPEDFARELEHYQIKE 843
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 274 QLLQEQVHAGGEHVPDGGAAAVQRQHLVDGPPAGAAHRHQRGL----PHTGTSNIIERE 438
Q+L + V GG+ +P G + ++ ++D + + + +R L P G S IE E
Sbjct: 165 QILAKDVALGGDELPKGPSQEKRKDLMIDSAISRSHYPEERELERWAPDEGDSECIELE 223
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 60 KHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSF-QLPTELERSVHRFTTFYSSQHSGRK 233
+H A S PL +D S + P Q + + QLP L+ S++RF SG K
Sbjct: 41 QHSALHSFVPLSVDCSPWTPADRRPPTQHNVNLPQLPECLQVSIYRFAMLPKKHLSGAK 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.129 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,966,465
Number of Sequences: 37544
Number of extensions: 239115
Number of successful extensions: 835
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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