Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120398X.Seq
(453 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 75 2e-14
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 75 2e-14
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 71 3e-13
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 71 3e-13
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 71 3e-13
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 68 3e-12
Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical pr... 66 9e-12
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 54 5e-08
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 54 5e-08
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 53 1e-07
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 53 1e-07
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 46 1e-05
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 46 1e-05
L15314-1|AAF99984.2| 728|Caenorhabditis elegans Anaphase promot... 31 0.52
AC084152-4|AAR85899.1| 753|Caenorhabditis elegans Hypothetical ... 29 1.2
AC084152-3|AAK39314.2| 772|Caenorhabditis elegans Hypothetical ... 29 1.2
U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 27 6.4
U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical pr... 27 6.4
U58758-1|AAB93429.2| 819|Caenorhabditis elegans Hypothetical pr... 27 6.4
AL110490-16|CAB54451.2| 922|Caenorhabditis elegans Hypothetical... 27 6.4
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 27 6.4
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 27 6.4
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 27 6.4
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 27 6.4
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 27 6.4
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 27 8.4
AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 74.9 bits (176), Expect = 2e-14
Identities = 34/87 (39%), Positives = 55/87 (63%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L +M D VSKDL +F++ A+ Q ++F++ VLSSGSWP +T LP +L +
Sbjct: 508 LSKMVNDTQVSKDLTADFKEKKADMLGQK-SVEFNVLVLSSGSWPTFPTTPITLPQQLSK 566
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMARG 263
++ F FY+ + +GR+L W+Y+ +RG
Sbjct: 567 TIEIFGQFYNEKFNGRRLTWVYSQSRG 593
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 74.9 bits (176), Expect = 2e-14
Identities = 34/87 (39%), Positives = 55/87 (63%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L +M D VSKDL +F++ A+ Q ++F++ VLSSGSWP +T LP +L +
Sbjct: 508 LSKMVNDTQVSKDLTADFKEKKADMLGQK-SVEFNVLVLSSGSWPTFPTTPITLPQQLSK 566
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMARG 263
++ F FY+ + +GR+L W+Y+ +RG
Sbjct: 567 TIEIFGQFYNEKFNGRRLTWVYSQSRG 593
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 71.3 bits (167), Expect = 3e-13
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 17/105 (16%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMAN-SSEQP--LHIDFSIQVLSSGSWPF----------- 140
L RMF DIG+S++L+ NF KH+A+ + QP + +L +GSWP
Sbjct: 507 LSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFVPTQTMILQAGSWPLNAPQLSTNSNN 566
Query: 141 ---QQSTSFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMARGN 266
Q +F LP L+ + F FY+ +H+GRKL WL+NM++G+
Sbjct: 567 QTAQDVANFHLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGD 611
Score = 41.1 bits (92), Expect = 4e-04
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +2
Query: 257 KGELLTNCFKNRYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNA 436
+G++ +Y + +QMA LL + + V+ + + G+ GD+L++ ++ +L+
Sbjct: 609 QGDVRLTYLDKQYVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDV 668
Query: 437 KLLVC 451
LL C
Sbjct: 669 TLLTC 673
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 71.3 bits (167), Expect = 3e-13
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 17/105 (16%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMAN-SSEQP--LHIDFSIQVLSSGSWPF----------- 140
L RMF DIG+S++L+ NF KH+A+ + QP + +L +GSWP
Sbjct: 490 LSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFVPTQTMILQAGSWPLNAPQLSTNSNN 549
Query: 141 ---QQSTSFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMARGN 266
Q +F LP L+ + F FY+ +H+GRKL WL+NM++G+
Sbjct: 550 QTAQDVANFHLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGD 594
Score = 41.1 bits (92), Expect = 4e-04
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +2
Query: 257 KGELLTNCFKNRYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNA 436
+G++ +Y + +QMA LL + + V+ + + G+ GD+L++ ++ +L+
Sbjct: 592 QGDVRLTYLDKQYVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDV 651
Query: 437 KLLVC 451
LL C
Sbjct: 652 TLLTC 656
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 71.3 bits (167), Expect = 3e-13
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 17/105 (16%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMAN-SSEQP--LHIDFSIQVLSSGSWPF----------- 140
L RMF DIG+S++L+ NF KH+A+ + QP + +L +GSWP
Sbjct: 566 LSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFVPTQTMILQAGSWPLNAPQLSTNSNN 625
Query: 141 ---QQSTSFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMARGN 266
Q +F LP L+ + F FY+ +H+GRKL WL+NM++G+
Sbjct: 626 QTAQDVANFHLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGD 670
Score = 41.1 bits (92), Expect = 4e-04
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +2
Query: 257 KGELLTNCFKNRYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNA 436
+G++ +Y + +QMA LL + + V+ + + G+ GD+L++ ++ +L+
Sbjct: 668 QGDVRLTYLDKQYVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDV 727
Query: 437 KLLVC 451
LL C
Sbjct: 728 TLLTC 732
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical
protein K08E7.7 protein.
Length = 729
Score = 68.1 bits (159), Expect = 3e-12
Identities = 32/87 (36%), Positives = 48/87 (55%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L +M +D +SKDL F+ S IDF++ + ++G+WP LP EL
Sbjct: 460 LVKMVEDAKISKDLTTEFKDIKTEKS-----IDFNVILQTTGAWPSLDQIKIILPRELST 514
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMARG 263
+ F TFY++ H+GR+LNW Y+ RG
Sbjct: 515 ILKEFDTFYNASHNGRRLNWAYSQCRG 541
>Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical
protein ZK856.1 protein.
Length = 765
Score = 66.5 bits (155), Expect = 9e-12
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHID-FSIQVLSSGSWPF--QQSTSFQLPTE 173
L RM QDI ++KD+N +F+K + ++ D +++VL+ G+W + F LP E
Sbjct: 473 LSRMLQDIELNKDMNSSFKKALTGTNNNKSIADSINMKVLNGGAWGRGGSERIRFSLPRE 532
Query: 174 LERSVHRFTTFYSSQHSGRKLNWLYNMARG 263
LE V FY QH+GRKL W+++ + G
Sbjct: 533 LEDFVPEMEAFYKKQHNGRKLCWMHHWSSG 562
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 290 RYTLEASTFQMAVLLQYND 346
R+ LE +TFQMAVL +ND
Sbjct: 573 RFDLECTTFQMAVLFCFND 591
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 54.0 bits (124), Expect = 5e-08
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF+D + L +FR + + ID S++VL++G WP Q LP EL
Sbjct: 476 LENMFRDKELWLTLATSFRD-WREAQPTKMSIDISLRVLTAGVWPTVQCNPVVLPQELSV 534
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMARGNS 269
+ FT +Y+ +H+GRKL N GN+
Sbjct: 535 AYEMFTQYYTEKHTGRKLT--INTLLGNA 561
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 54.0 bits (124), Expect = 5e-08
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF+D + L +FR + + ID S++VL++G WP Q LP EL
Sbjct: 476 LENMFRDKELWLTLATSFRD-WREAQPTKMSIDISLRVLTAGVWPTVQCNPVVLPQELSV 534
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMARGNS 269
+ FT +Y+ +H+GRKL N GN+
Sbjct: 535 AYEMFTQYYTEKHTGRKLT--INTLLGNA 561
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 52.8 bits (121), Expect = 1e-07
Identities = 31/88 (35%), Positives = 47/88 (53%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L RMF DIG+S++L+ NF KH+A+ + F P Q L+
Sbjct: 490 LSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFV---------PTQTMI-------LQP 533
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMARGN 266
+ F FY+ +H+GRKL WL+NM++G+
Sbjct: 534 VIQEFEKFYTGKHNGRKLTWLFNMSQGD 561
Score = 41.1 bits (92), Expect = 4e-04
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +2
Query: 257 KGELLTNCFKNRYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNA 436
+G++ +Y + +QMA LL + + V+ + + G+ GD+L++ ++ +L+
Sbjct: 559 QGDVRLTYLDKQYVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDV 618
Query: 437 KLLVC 451
LL C
Sbjct: 619 TLLTC 623
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 52.8 bits (121), Expect = 1e-07
Identities = 31/88 (35%), Positives = 47/88 (53%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L RMF DIG+S++L+ NF KH+A+ + F P Q L+
Sbjct: 490 LSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFV---------PTQTMI-------LQP 533
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMARGN 266
+ F FY+ +H+GRKL WL+NM++G+
Sbjct: 534 VIQEFEKFYTGKHNGRKLTWLFNMSQGD 561
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/65 (23%), Positives = 35/65 (53%)
Frame = +2
Query: 257 KGELLTNCFKNRYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNA 436
+G++ ++ + +QMA LL + + V+ + + G+ GD+L++ ++ +L+
Sbjct: 559 QGDVRLTYLDKQHVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDV 618
Query: 437 KLLVC 451
LL C
Sbjct: 619 TLLTC 623
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 46.0 bits (104), Expect = 1e-05
Identities = 19/85 (22%), Positives = 45/85 (52%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF+D+ S++ F +++ + +++ + F+ +V++ WP + +P E+
Sbjct: 525 LEGMFKDMDASENYGRLFNQYLEHMNKEKAN--FTARVITPEYWPTYDTYEINIPKEMRD 582
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMA 257
++ + FY QH R + W + +A
Sbjct: 583 TLTDYQDFYRVQHGNRNVKWHHGLA 607
Score = 29.9 bits (64), Expect = 0.91
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 299 LEASTFQMAVLLQYNDNTSWTVRQLEQHTGI 391
L A+ +Q +LL +N +WTV ++ +HT I
Sbjct: 623 LIATMYQTVILLLFNKCETWTVAEIVEHTKI 653
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 46.0 bits (104), Expect = 1e-05
Identities = 19/85 (22%), Positives = 45/85 (52%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF+D+ S++ F +++ + +++ + F+ +V++ WP + +P E+
Sbjct: 562 LEGMFKDMDASENYGRLFNQYLEHMNKEKAN--FTARVITPEYWPTYDTYEINIPKEMRD 619
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNMA 257
++ + FY QH R + W + +A
Sbjct: 620 TLTDYQDFYRVQHGNRNVKWHHGLA 644
Score = 29.9 bits (64), Expect = 0.91
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 299 LEASTFQMAVLLQYNDNTSWTVRQLEQHTGI 391
L A+ +Q +LL +N +WTV ++ +HT I
Sbjct: 660 LIATMYQTVILLLFNKCETWTVAEIVEHTKI 690
>L15314-1|AAF99984.2| 728|Caenorhabditis elegans Anaphase promoting
complex; seealso mat protein 2 protein.
Length = 728
Score = 30.7 bits (66), Expect = 0.52
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +3
Query: 12 MFQDIGVSKDLNENFR---KHMANSSEQPLHIDFSIQVLSSGSWPFQQS--TSFQLPTEL 176
M +D+ S D+++ F + A + + P+ I S ++SS WP ++ T +P L
Sbjct: 457 MLRDVIHSLDIDKKFEDMSERSAGNYDVPI-IPISACIISSHYWPKLETEKTEALMPQPL 515
Query: 177 ERSVHRFTTFYSSQHSGRKLNWL 245
+ ++ + Y RKL WL
Sbjct: 516 QAAMDVYQETYLDVKRDRKLEWL 538
>AC084152-4|AAR85899.1| 753|Caenorhabditis elegans Hypothetical
protein Y102A11A.2b protein.
Length = 753
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 54 FRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELERSVHRFTTFY 209
+ + ++S+EQP + S S FQ S S Q P E RS+H ++ +Y
Sbjct: 119 YNSYASHSNEQPTTVSSS-----SARQSFQDSASMQNPAESTRSIH-YSRYY 164
>AC084152-3|AAK39314.2| 772|Caenorhabditis elegans Hypothetical
protein Y102A11A.2a protein.
Length = 772
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 54 FRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELERSVHRFTTFY 209
+ + ++S+EQP + S S FQ S S Q P E RS+H ++ +Y
Sbjct: 119 YNSYASHSNEQPTTVSSS-----SARQSFQDSASMQNPAESTRSIH-YSRYY 164
>U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical
protein F58F9.7 protein.
Length = 667
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 366 ASWSSTPASKGTSSYRYFKYY 428
+SWSS P + S+YRY Y+
Sbjct: 475 SSWSSNPVNDVLSAYRYLTYH 495
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 239 VQLAPGVLRRVERGEPVH 186
V+L+PG LR +ERG+ +H
Sbjct: 1005 VKLSPGKLRELERGQDLH 1022
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 239 VQLAPGVLRRVERGEPVH 186
V+L+PG LR +ERG+ +H
Sbjct: 1005 VKLSPGKLRELERGQDLH 1022
>U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical
protein F48C1.8 protein.
Length = 343
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +1
Query: 268 PHQLLQEQVHAGGEHVPDGGAAAVQRQHLVDGPPAGAAHRHQRGLPH 408
P +L + H GG H GG + H G G H H G H
Sbjct: 163 PMYMLSCEAHGGGHHGGGGGGGS----HHHGGGGGGGGHHHHGGGGH 205
>U58758-1|AAB93429.2| 819|Caenorhabditis elegans Hypothetical
protein ZK1127.7 protein.
Length = 819
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 239 VQLAPGVLRRVERGEPVH 186
V+L+PG LR +ERG+ +H
Sbjct: 578 VKLSPGKLRELERGQDLH 595
>AL110490-16|CAB54451.2| 922|Caenorhabditis elegans Hypothetical
protein Y48B6A.11 protein.
Length = 922
Score = 27.1 bits (57), Expect = 6.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 385 GVLLQLADRPRGVVVVLQQHRH 320
G + ++ D PRGVV++ +H H
Sbjct: 763 GFVCEVRDYPRGVVMICHKHEH 784
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 63 HMANSSEQPLHIDFSIQVLSSGSWPF-QQSTSFQLPTELERSVHRFTTFYS 212
+ S+++PL + SIQ+ W F + S + T E S R + YS
Sbjct: 541 YSTKSAQEPLQLPLSIQIGDYNVWDFLAEVMSNRAATSSEMSTFRLSPAYS 591
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 63 HMANSSEQPLHIDFSIQVLSSGSWPF-QQSTSFQLPTELERSVHRFTTFYS 212
+ S+++PL + SIQ+ W F + S + T E S R + YS
Sbjct: 539 YSTKSAQEPLQLPLSIQIGDYNVWDFLAEVMSNRAATSSEMSTFRLSPAYS 589
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 63 HMANSSEQPLHIDFSIQVLSSGSWPF-QQSTSFQLPTELERSVHRFTTFYS 212
+ S+++PL + SIQ+ W F + S + T E S R + YS
Sbjct: 539 YSTKSAQEPLQLPLSIQIGDYNVWDFLAEVMSNRAATSSEMSTFRLSPAYS 589
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 63 HMANSSEQPLHIDFSIQVLSSGSWPF-QQSTSFQLPTELERSVHRFTTFYS 212
+ S+++PL + SIQ+ W F + S + T E S R + YS
Sbjct: 539 YSTKSAQEPLQLPLSIQIGDYNVWDFLAEVMSNRAATSSEMSTFRLSPAYS 589
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 63 HMANSSEQPLHIDFSIQVLSSGSWPF-QQSTSFQLPTELERSVHRFTTFYS 212
+ S+++PL + SIQ+ W F + S + T E S R + YS
Sbjct: 539 YSTKSAQEPLQLPLSIQIGDYNVWDFLAEVMSNRAATSSEMSTFRLSPAYS 589
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 26.6 bits (56), Expect = 8.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 283 QEQVHAGGEHVPDGGAAAVQRQHLVDGPPAGAAHRHQRGLPHTGTSN 423
Q+Q GG +P G VQ+Q PP+ Q+ LP T++
Sbjct: 678 QQQQFGGGSGLPPSGVVPVQQQ--PQQPPSLQQQHSQQSLPTPPTTS 722
>AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical
protein ZC132.4 protein.
Length = 831
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +3
Query: 36 KDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELERSVH 191
K+ + HM S E L ++ IQ+L + S L T +R +H
Sbjct: 613 KEAWTQIQAHMTQSPEPNLRLEHQIQILQKDQQEMRSSIRLILETLSKRDLH 664
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.129 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,404
Number of Sequences: 27780
Number of extensions: 185633
Number of successful extensions: 725
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -