Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120398X.Seq
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.3  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
 Frame = +2

Query: 170  GAGALRAPVHHVLLVATLRAQ--AELALQ--HGKGELLTNCFKNRYTLEASTFQMAVLL 334
            GA  LR  +HH  L   LRA   A + L+  H    +L    +N    E S F+    L
Sbjct: 1091 GAAGLRLCLHHRDLPCVLRASTPAPVVLEAVHASRRVLIVLTRNFLLTEWSRFEFRAAL 1149


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 174 LERSVHRFTTFYSSQHSGRKLNWLYNMARGNSSP 275
           LE++  R T   +S    + L+  YN+   NSSP
Sbjct: 442 LEKTYERDTCLLASDALKQILSAAYNVELHNSSP 475


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 174 LERSVHRFTTFYSSQHSGRKLNWLYNMARGNSSP 275
           LE++  R T   +S    + L+  YN+   NSSP
Sbjct: 480 LEKTYERDTCLLASDALKQILSAAYNVELHNSSP 513


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 355 RGVVVVLQQHRHLERARLQRVPVLE 281
           R  V ++QQ R  E  RL +  +LE
Sbjct: 39  RREVWLIQQEREREHERLMKKMILE 63


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 355 RGVVVVLQQHRHLERARLQRVPVLE 281
           R  V ++QQ R  E  RL +  +LE
Sbjct: 39  RREVWLIQQEREREHERLMKKMILE 63


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 355 RGVVVVLQQHRHLERARLQRVPVLE 281
           R  V ++QQ R  E  RL +  +LE
Sbjct: 39  RREVWLIQQEREREHERLMKKMILE 63


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 355 RGVVVVLQQHRHLERARLQRVPVLE 281
           R  V ++QQ R  E  RL +  +LE
Sbjct: 39  RREVWLIQQEREREHERLMKKMILE 63


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 355 RGVVVVLQQHRHLERARLQRVPVLE 281
           R  V ++QQ R  E  RL +  +LE
Sbjct: 39  RREVWLIQQEREREHERLMKKMILE 63


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 355 RGVVVVLQQHRHLERARLQRVPVLE 281
           R  V ++QQ R  E  RL +  +LE
Sbjct: 39  RREVWLIQQEREREHERLMKKMILE 63


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 355 RGVVVVLQQHRHLERARLQRVPVLE 281
           R  V ++QQ R  E  RL +  +LE
Sbjct: 39  RREVWLIQQEREREHERLMKKMILE 63


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 355 RGVVVVLQQHRHLERARLQRVPVLE 281
           R  V ++QQ R  E  RL +  +LE
Sbjct: 39  RREVWLIQQEREREHERLMKKMILE 63


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +2

Query: 296 TLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQV 415
           T+   TFQ   L+    + +W+        G  G++ I+V
Sbjct: 118 TVPPDTFQSIALVDVVKSANWSYVSTVYSEGSYGEYGIEV 157


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +2

Query: 296 TLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQV 415
           T+   TFQ   L+    + +W+        G  G++ I+V
Sbjct: 208 TVPPDTFQSIALVDVVKSANWSYVSTVYSEGSYGEYGIEV 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.129    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,201
Number of Sequences: 438
Number of extensions: 2195
Number of successful extensions: 23
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)