Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120398X.Seq
(453 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C... 66 1e-11
At1g02980.1 68414.m00268 cullin family protein similar to cullin... 63 7e-11
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo... 60 7e-10
At1g69670.1 68414.m08018 cullin, putative contains similarity to... 58 3e-09
At4g02570.1 68417.m00351 cullin family protein similar to cullin... 56 8e-09
At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3, ubiqu... 36 0.010
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic... 29 1.9
At2g29740.1 68415.m03614 UDP-glucoronosyl/UDP-glucosyl transfera... 28 2.6
At5g43160.1 68418.m05268 expressed protein contains Pfam profil... 27 4.5
At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containi... 27 7.8
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill... 27 7.8
At1g20050.1 68414.m02510 C-8,7 sterol isomerase identical to C-8... 27 7.8
>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
profile PF00888: Cullin family
Length = 792
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF+DI +SK++NE+F++ ++ P I+ S+ VL++G WP +LP EL
Sbjct: 523 LEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVKLPHELNV 582
Query: 183 SVHRFTTFYSSQHSGRKLNW 242
F FY S++SGR+L W
Sbjct: 583 YQDIFKEFYLSKYSGRRLMW 602
>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
[Homo sapiens] GI:3139077; contains Pfam profile
PF00888: Cullin family
Length = 742
Score = 63.3 bits (147), Expect = 7e-11
Identities = 24/84 (28%), Positives = 52/84 (61%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
++ M D+ ++K+ NF + ++ + + L +DF++ VL++G WP ++T LP E+
Sbjct: 475 MEGMLTDMTLAKEHQTNFVEFLSVNKTKKLGMDFTVTVLTTGFWPSYKTTDLNLPIEMVN 534
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNM 254
V F +Y ++ + R+L+W+Y++
Sbjct: 535 CVEAFKAYYGTKTNSRRLSWIYSL 558
>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
contains Pfam profile PF00888: Cullin family
Length = 732
Score = 60.1 bits (139), Expect = 7e-10
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF D+ S+D F SE P I +QVL++GSWP Q + LP E+
Sbjct: 461 LEGMFTDMKTSEDTMRGFYGSHPELSEGPTLI---VQVLTTGSWPTQPAVPCNLPAEVSV 517
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNM 254
+F ++Y H+GR+L+W NM
Sbjct: 518 LCEKFRSYYLGTHTGRRLSWQTNM 541
Score = 34.3 bits (75), Expect = 0.039
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 290 RYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNAK 439
++ L STFQM VL+ +N++ + +++EQ T I L + LQ L K
Sbjct: 555 KHELNVSTFQMCVLMLFNNSDRLSYKEIEQATEIPAADLKRCLQSLACVK 604
>At1g69670.1 68414.m08018 cullin, putative contains similarity to
Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
[Homo sapiens]; contains Pfam profile PF00888: Cullin
family
Length = 732
Score = 58.0 bits (134), Expect = 3e-09
Identities = 30/84 (35%), Positives = 44/84 (52%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
L+ MF D+ S D F SE P + +QVL++GSWP Q + LP E+
Sbjct: 461 LEGMFTDMKTSHDTLLGFYNSHPELSEGPTLV---VQVLTTGSWPTQPTIQCNLPAEVSV 517
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNM 254
+F ++Y H+GR+L+W NM
Sbjct: 518 LCEKFRSYYLGTHTGRRLSWQTNM 541
Score = 33.1 bits (72), Expect = 0.090
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 290 RYTLEASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLNAK 439
++ L STFQM VL+ +N++ + +++EQ T I L + LQ + K
Sbjct: 555 KHELNVSTFQMCVLMLFNNSDRLSYKEIEQATEIPTPDLKRCLQSMACVK 604
>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
[Homo sapiens] GI:3639052; contains Pfam profile
PF00888: Cullin family
Length = 738
Score = 56.4 bits (130), Expect = 8e-09
Identities = 23/84 (27%), Positives = 48/84 (57%)
Frame = +3
Query: 3 LQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELER 182
++ M D+ ++++ +F ++ ++ ID ++ VL++G WP +S LP+E+ +
Sbjct: 471 MEGMVTDLTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIK 530
Query: 183 SVHRFTTFYSSQHSGRKLNWLYNM 254
V F FY ++ RKL W+Y++
Sbjct: 531 CVEVFKGFYETKTKHRKLTWIYSL 554
>At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3,
ubiquitin ligase; contains similarity to
anaphase-promoting complex subunit 2 GI:6180009 from
[Homo sapiens]
Length = 865
Score = 36.3 bits (80), Expect = 0.010
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +3
Query: 12 MFQDIGVSKDLNENFRKHM---ANSSEQPLHID-FSIQVLSSGSWPFQQSTSFQLPTELE 179
M D+ SK +N N +K A E L +D + +LS+ WP Q +LP ++
Sbjct: 598 MLNDLIDSKRVNTNIKKASQTGAELRENELSVDTLTSTILSTNFWPPIQDEPLELPGPVD 657
Query: 180 RSVHRFTTFYSSQHSGRKLNWLYNM 254
+ + + Y + RKL W N+
Sbjct: 658 KLLSDYANRYHEIKTPRKLLWKKNL 682
>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
to chromomethylase CMT2 [Arabidopsis thaliana]
GI:14583094
Length = 1295
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 142 WKGHEPDDSTWMLKSMCRGCSELFAMCFLKFSFKSFDTPM 23
WKG+ D+ TW L C + F+ FKS P+
Sbjct: 864 WKGYRSDEDTWELAEELSNCQDAIRE-FVTSGFKSKILPL 902
>At2g29740.1 68415.m03614 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 474
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 268 PHQLLQEQVHAGGEHVPDGGAAAVQRQHLVDG 363
P + L+E AG E V DGG++ V + +DG
Sbjct: 442 PRRKLKEIAEAGKEAVMDGGSSFVAVKRFIDG 473
>At5g43160.1 68418.m05268 expressed protein contains Pfam profile:
PF04484 family of unknown function (DUF566)
Length = 445
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 390 MPVCCSSWRTVHEVLSLYCSSTAIWNVLASSVYLFLKQL 274
+PV C + V V CS+ + +ASS+ L L ++
Sbjct: 346 LPVDCGAMVNVQSVKDAICSAVDVMQAMASSICLLLPKV 384
>At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 691
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 209 LVATLRAQAELALQHGKGELLTNCFKNRYTLEASTFQMAVLLQYNDNTSW 358
L++TL + L L+H G+ + Y +AST+ M + Y SW
Sbjct: 582 LLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTY-MVLFNLYASGESW 630
>At1g77460.1 68414.m09020 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2110
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +2
Query: 206 LLVATLRAQAELALQHGKGELLTNCFKNRYTLEASTF----QMAVLLQYNDNTSWTVRQL 373
L LR+ L QH + L N + + TLEA +F + L+ + +++S ++QL
Sbjct: 1490 LFAVLLRSDLTLWGQHSALQALVNILEKQQTLEAFSFTPSEAIVPLISFLESSSQAIQQL 1549
>At1g20050.1 68414.m02510 C-8,7 sterol isomerase identical to C-8,7
sterol isomerase GI:11279073 from [Arabidopsis thaliana]
(Plant Mol. Biol. 38 (5), 807-815 (1998))
Length = 223
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 399 TSSYRYFKYY*TRNCWCV 452
T+S+ Y+ YY NCW V
Sbjct: 172 TNSFYYYSYYIGANCWWV 189
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.129 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,992,582
Number of Sequences: 28952
Number of extensions: 164647
Number of successful extensions: 587
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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