Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120397.Seq
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    30   0.39 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   2.1  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    27   2.7  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   4.8  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   4.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.3  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   8.4  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   8.4  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   8.4  

>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 591 IVFNCCMTKSRLLLSRVYTISSMMRLRNAWCPI 493
           IV +C + K  L+ SR   IS   +L+N W P+
Sbjct: 248 IVVSCFLEKRVLIPSRTMPISFFPKLKNVWLPL 280


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 463 PRVLLTRLPPYGTPCISQSHHRRYGVYARQKQSRF 567
           P+V ++  PP  T  +S S+   Y    +Q+Q+ F
Sbjct: 136 PQVGMSVAPPVATAAVSMSYPHHYSASVQQQQATF 170


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 309 FACLMKYKDIQKYEVQQLIEWAINASPDMDLQQ--FRIEFMDKTT--ELNLRSCQPKSFT 476
           F  L +  DI  YE+   I+ AIN+S    L+    R+   D TT  E  L +  P+ F 
Sbjct: 567 FNFLERTSDISAYEIACAIKTAINSSKVKLLRSALARLSLFDSTTSREALLLAFVPEDFD 626

Query: 477 YTFTTI 494
             F T+
Sbjct: 627 SLFKTL 632


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 318 LMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQ 461
           LM  K   +  VQ+++ +AIN S + DL+     +    T  N+R  Q
Sbjct: 495 LMNGKGNDEELVQKVLNYAINQSSNQDLRDRAFAYQRLLTPENVRKAQ 542


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 145  STIVLLVAMIPLTPLFSRYKDSYLLYSFRLIDLLRASNRR-TLPNCCL 285
            +T+V L++ +P+T   ++ +D + + SFR +D ++ S R  + P C L
Sbjct: 1089 NTLVSLLSNVPVTEYLNQLEDIWNM-SFRTLDDIKESVREASFPLCKL 1135


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
 Frame = +3

Query: 3   EFSKISKLVALVVRKTFCNIFEINNRLVGVRVGANVQRRCGRRLTQIQHDRFASRHD--T 176
           E+S+IS   A   +K    I  +NN + G   G  +  R   ++++        R D  T
Sbjct: 620 EYSQISGQDASNAQKRIEVIVNVNN-VYGTIFGNELAYR-QEKISKFTDPSSVIRSDLWT 677

Query: 177 ADAAFFSLQRQLFVVFVSSHRPFASFKSAHLTKL---LSSQATYLYHFACLM 323
            +     L R+     +S HR     K AH+ K+   L  Q  +L    CL+
Sbjct: 678 VEVDHLDLLRKQIEDSISLHRDVRDSKDAHILKVSNKLRKQILHLVEQNCLL 729


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
 Frame = +3

Query: 192  FSLQRQLFVVFVSSHRPFASFKSAHLTKLLSSQATYLYHFACLMKYKDI-QKYEVQQLI- 365
            F  +   F + +S  R   S +   L  L SS    +     ++  K++ +K+E  +L  
Sbjct: 3639 FKQKDNCFTLKLSIERQIRSLQEQLLKTLCSSNENIVGTDEIVVLLKNLKEKHETIRLAY 3698

Query: 366  --EWAINASPDMDLQQFRIE---FMDKTTELNLRSCQPKSFTYTFTTIWDTMH 509
                +IN   D  ++++++    F+             KS++++F  IW T H
Sbjct: 3699 SESQSINRKVDELIRRYKLSIKSFLSVVVVFQHFISLKKSYSFSFNFIWSTFH 3751


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 491 HMGHHAFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYN 610
           H+ +H F   +I+  ++ +   S DFV+  L  + VL  N
Sbjct: 174 HLSYHLFALWVINLYIWIKLIDSKDFVLGFLAGLSVLLLN 213


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -1

Query: 662 DVHIMIAAHGAL*YEKIRCKIAPSSFSTAA*QNLDCFCLAYTPYRR**D*EMHGVPYGGK 483
           ++  ++  +G   +E +R +    + S +  +  D FC ++TP+R   D   H +  GGK
Sbjct: 70  NIPFILLTNGGGMHESVRAQRLSKTLSVSLTE--DDFCQSHTPFRALADKYKHVLVLGGK 127


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +3

Query: 306 HFACLMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSFTYTF 485
           + AC   Y D +K E + +I W      +  +  FR +   + +  ++R+ + K  +  F
Sbjct: 323 NIACEPMYIDYRKDETEAIIRWKTPLHAETCINAFRTQERKQNSHDDIRAHRKKGSSRPF 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,394
Number of Sequences: 5004
Number of extensions: 64688
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)