Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120397.Seq
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5)                 29   3.9  
SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)        28   6.7  
SB_20979| Best HMM Match : ATP-gua_PtransN (HMM E-Value=5.6e-08)       28   6.7  
SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)                  28   6.7  
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       28   8.9  
SB_9093| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                       28   8.9  
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = -2

Query: 466 LGWHERKLSSVVLSINSMRNCCKSMSGDALMAHSINCCTSYF*MSLYFIKHAKWY 302
           LGWH RK  +             S S     AH   CC+  F  S  F+KH  W+
Sbjct: 75  LGWHGRKTPNK--HETQEVKATSSPSTTEPFAHQCTCCSKKFNNSSRFLKHMTWH 127


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 500 HHAFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFHTTVR 634
           H  ++S++IDD  Y  +   ++ V+ ++ T KVL  +VF + T R
Sbjct: 435 HGDYMSIVIDDKQYCNNSHGVNIVVLEMLTFKVL--HVFSYETSR 477


>SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +3

Query: 249 SFKSAHLTKLLSSQAT---YLYHFACLMKYKDIQKYEVQQLI 365
           S KS +  KLL ++ +   YLYHF   +K K+ +++E +Q+I
Sbjct: 306 SAKSGYNVKLLFTKLSKDLYLYHFTRYLKMKEERRHEGEQII 347


>SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5)
          Length = 55

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 397 TCNS--FA*NLWTKPQNSICVRASP 465
           TC    F  ++W+ PQN+ICVR  P
Sbjct: 17  TCKKGLFKMSVWSNPQNNICVRECP 41


>SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 318 LMKYKDIQKYEVQQL--IEWAINASPDMD--LQQFRIEFMDKTTELNLRSCQPKSFTYTF 485
           L+ YKD + YE  +L  IE + +  P+++    Q R + +     L       K  + T 
Sbjct: 170 LVNYKDTRDYETSELKRIELSHDVYPNLEQFKNQSRTKLLPLQQTLKNLDTTDKQSSATA 229

Query: 486 TTIWDTMHFSVS 521
             I+D M F+VS
Sbjct: 230 NDIYDIMSFAVS 241


>SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)
          Length = 490

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 187 LFSRYKDSYLLYSFRLIDLLR--ASNRRTLPNCCLRKQLTYTILRV 318
           ++  YKD+  +Y FRL D+L    S R T+      ++  YT +++
Sbjct: 80  IYEEYKDAKTVYGFRLFDILSYDVSYRDTIGIRATDEECYYTFIKL 125


>SB_20979| Best HMM Match : ATP-gua_PtransN (HMM E-Value=5.6e-08)
          Length = 322

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 187 LFSRYKDSYLLYSFRLIDLLR--ASNRRTLPNCCLRKQLTYTILRV 318
           ++  YKD+  +Y FRL D+L    S R T+      ++  YT +++
Sbjct: 71  IYEEYKDAKTVYGFRLFDILSYDVSYRDTIGIRATDEECYYTFIKL 116


>SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)
          Length = 508

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
 Frame = -2

Query: 337 MSLYFIKHAKWYK*VACEDNNLVRCADLKLAKGL*D-ETNTTNSCLCNEKKAASAVSWRL 161
           +SL+        K ++ ED NL  C D KL   L   +      C+C + +A  A    L
Sbjct: 375 LSLFTKSSPGTLKSLSSEDINL-NCVDTKLVSSLMPFQREGVAFCICQDGRAIIADDMGL 433

Query: 160 AKRSCCICVRRRPQRRCTLAPTRTPTSLLFISKILQNVLRT--TNATSLLI 14
            K    ICV    ++   L     P+S+    K   NV+ T   N T+ LI
Sbjct: 434 GKTVQAICVASFYRKEWPLLVV-APSSMRLTWKQSINVVLTGKDNVTAGLI 483


>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
 Frame = +1

Query: 451 VRASPR-----VLLTRLPPYGTPCISQSHHRRYGV------YARQKQSRFCHAAVENDEG 597
           +RASPR     ++LT L P+    I +  H  Y +      Y++Q  +R   A V+ DEG
Sbjct: 60  LRASPRNYSVILMLTALAPHRQCAICREAHNEYLIIANSWRYSQQYTNRLFFAMVDFDEG 119

Query: 598 AILQRIFSYYSAP 636
             +       SAP
Sbjct: 120 PDVFNALRLNSAP 132


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 490 PYGTPCISQSHHRRYGVYARQKQSRFCHAAVENDEGAILQRIFS 621
           PYG P + QS + ++GV+     S    AA E    A+++  F+
Sbjct: 424 PYGVPLVMQSFNWQHGVFLATSLSSETTAAAEFKGKAVMRDPFA 467


>SB_9093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 192 FSLQRQLFVVFVSSHRPFASFKSAHLTKLLSSQATYLYHFACLMKYKDIQKYEVQQLIEW 371
           FSL + L    + S + F+  K +  T L SSQA  L+  +     +  Q ++  +L   
Sbjct: 53  FSLHKPLVFTSLQSSQAFSLHKPSVFTSLQSSQAFSLHKPSVFTSLQSSQAFKEWRLCFE 112

Query: 372 AINASPD 392
           A+  +P+
Sbjct: 113 AMEINPE 119


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 490 PYGTPCISQSHHRRYGVYARQKQSRFCHAAVENDEGAILQRIFS 621
           PYG P + QS + ++GV+     S    AA E    A+++  F+
Sbjct: 303 PYGVPLVMQSFNWQHGVFLATSLSSETTAAAEFKGKAVMRDPFA 346


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 110  YVSADTDADEPIIYFENITECLTDDQCDKFTYFA 9
            YV+   D D  I YF N  E  + DQ  KF  FA
Sbjct: 3294 YVAGIKDTDLHIEYFWNALENFSQDQLRKFIKFA 3327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,425,291
Number of Sequences: 59808
Number of extensions: 502369
Number of successful extensions: 1263
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)