Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120397.Seq
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)... 29 2.4
At5g07380.1 68418.m00845 hypothetical protein 29 2.4
At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)... 29 2.4
At2g21370.2 68415.m02542 xylulose kinase, putative similar to xy... 29 2.4
At2g21370.1 68415.m02543 xylulose kinase, putative similar to xy... 29 2.4
At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ bo... 28 5.5
At5g59810.1 68418.m07499 subtilase family protein subtilisin-lik... 28 7.3
At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ... 27 9.6
At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containi... 27 9.6
At4g05150.1 68417.m00773 octicosapeptide/Phox/Bem1p (PB1) domain... 27 9.6
At3g59240.1 68416.m06604 F-box family protein contains F-box dom... 27 9.6
At3g14360.1 68416.m01817 lipase class 3 family protein low simil... 27 9.6
At2g37035.1 68415.m04543 expressed protein 27 9.6
>At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)
family protein similar to SP|Q99816 Tumor susceptibility
gene 101 protein {Homo sapiens}; contains Pfam profile
PF05743: Tumour susceptibility gene 101 protein (TSG101)
Length = 368
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 512 LSLIIDDMVYTRDKSSLDFVM---QQLKTMKVLFYNVFFHTTVRHVPRSL 652
L L I+D+VY+ DKS D + Q L+ +++L FFH R +
Sbjct: 304 LDLAIEDVVYSMDKSFRDGSLPFDQYLRNVRLLSREQFFHRATAEKVREI 353
>At5g07380.1 68418.m00845 hypothetical protein
Length = 595
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 389 RHGLATV-SHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHHAFLSLIIDDMVYTRDKSSLD 565
R GL + RI G + + +FA+ P F L + HHA SL +D V D+S
Sbjct: 44 RIGLCYILKDRISGNDQQLKFAYTPTGNFCLRDF----HHAINSLPLDAFVPEIDESGA- 98
Query: 566 FVMQQLKTMKVLFYNVFFHTTVRHVPRSL 652
+ LK VL + R + R +
Sbjct: 99 ISCRDLKLSSVLCDRALYSWGGRDIMRKV 127
>At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)
family protein contains Pfam profile PF05743: Tumour
susceptibility gene 101 protein (TSG101); similar to
Tumor susceptibility gene 101 protein
(Swiss-Prot:Q99816) [Homo sapiens]
Length = 398
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 512 LSLIIDDMVYTRDKSSLDFVM---QQLKTMKVLFYNVFFH 622
L L I+D +Y+ DKS D V+ Q L+ +++L FFH
Sbjct: 334 LDLAIEDAIYSLDKSFQDGVVPFDQYLRNVRLLSREQFFH 373
>At2g21370.2 68415.m02542 xylulose kinase, putative similar to
xylulose kinase (Xylulokinase) [Bacillus subtilis]
Swiss-Prot:P39211
Length = 385
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 529 RYGVYARQKQSRFCHAAVENDEGAILQRIFS 621
RYGVY+ + ++ N GAIL+++FS
Sbjct: 223 RYGVYSHRLDDKWLVGGASNTGGAILRQLFS 253
>At2g21370.1 68415.m02543 xylulose kinase, putative similar to
xylulose kinase (Xylulokinase) [Bacillus subtilis]
Swiss-Prot:P39211
Length = 478
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 529 RYGVYARQKQSRFCHAAVENDEGAILQRIFS 621
RYGVY+ + ++ N GAIL+++FS
Sbjct: 316 RYGVYSHRLDDKWLVGGASNTGGAILRQLFS 346
>At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ
boundaries domain protein 1 (LBD1) identical to
SP|Q9LQR0 LOB domain protein 1 {Arabidopsis thaliana}
Length = 190
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -2
Query: 232 DETNTTNSCLCNEKKAASAVSWRLAKRSCCIC--VRRRPQRRCTLAPTRTPT 83
D + T + + ++S R+ C C +RRR RC LAP PT
Sbjct: 6 DASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPT 57
>At5g59810.1 68418.m07499 subtilase family protein subtilisin-like
protease AIR3, Arabidopsis thaliana, EMBL:AF098632
Length = 778
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 192 FSLQRQLFVVFVSSHRPFASFKSAHLTKLLSSQATYLYHF 311
F+L++ ++V++ SH SAHL + S T+L F
Sbjct: 36 FALKKS-YIVYLGSHAHLPQISSAHLDGVAHSHRTFLASF 74
>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
similar to unknown protein (pir |T04270)
Length = 398
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +2
Query: 428 QNHRTQFAFVP-AQEFYLHVYHHMGHHAFLSLIIDDMVYTRDKSS-LDFVMQQLKTMKVL 601
QNH Q F P LH +HH HH S SS L F++ + V
Sbjct: 15 QNHHEQPFFYPLGSSSSLHHHHHHHHHQVPSNSSSSSSSISSLSSYLPFLINSQEDQHVA 74
Query: 602 FYNVFFHTTVRHVPRSL 652
YN +H H+ + L
Sbjct: 75 -YNNTYHADHLHLSQPL 90
>At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 506
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 500 HHAFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFHTTVRHVPRS 649
++A S+++D++V + ++D ++ Q+K F F +RH RS
Sbjct: 88 NNATYSVLLDNLVRHKKFLAVDAILHQMKYETCRFQESLFLNLMRHFSRS 137
>At4g05150.1 68417.m00773 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein various predicted proteins
contains Pfam profile PF00564: PB1 domain
Length = 477
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 392 HGLATVSHRIYGQNHRTQFAFVPAQEFYLHVYHH--MGHH 505
H + +H + NH Q +P Q YL YHH MG+H
Sbjct: 366 HMVQQGNHMVQPGNHMVQPVQMPGQ--YLQQYHHVPMGYH 403
>At3g59240.1 68416.m06604 F-box family protein contains F-box domain
Pfam:PF00646
Length = 504
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 243 FASFKSAHLTKLLSSQATYLYHFACLMKYKD 335
F K A LT LLS + YL+ FA ++ + D
Sbjct: 24 FVPTKEAALTSLLSEKWRYLFAFAPILDFDD 54
>At3g14360.1 68416.m01817 lipase class 3 family protein low
similarity to Chain A, Lipase Ii From Rhizopus Niveus
GI:1942798; contains Pfam profile PF01764: Lipase
Length = 518
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 479 VSKTLGLARTQIEFCGFVHKFYAKLLQVHVG 387
V K + L RT +EF GFV F+ L + G
Sbjct: 78 VRKIIRLLRTPMEFTGFVVDFFLNLFSANGG 108
>At2g37035.1 68415.m04543 expressed protein
Length = 433
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 479 HVYHHMGHHAFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFHTTVRH 637
H +HH HHA LS + R +S F L + + F FH+ V H
Sbjct: 4 HHHHHHNHHARLSRLRTTTQLLRQTTS-SFSSHPLTFIFLTFLLFSFHSLVDH 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,878,754
Number of Sequences: 28952
Number of extensions: 331420
Number of successful extensions: 931
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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