Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120395.Seq
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    28   1.5  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p...    26   6.1  
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa...    26   6.1  
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    26   6.1  
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce...    26   6.1  
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    26   6.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.1  
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy...    26   6.1  
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc...    26   6.1  
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc...    26   6.1  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    26   6.1  
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy...    26   6.1  
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos...    26   6.1  

>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 367 EQVYPDKDFSLKLKRVINMFLNDEIE 444
           +QV+PD   S +  R++N F+ND  E
Sbjct: 46  KQVHPDTGISNQAMRILNSFVNDIFE 71


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 637 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT 539
           SSF+ RKF   LSSS ++ L++    N++   T
Sbjct: 858 SSFINRKFGVLLSSSFIQQLNTVENLNLSFNST 890


>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249


>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249


>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 655 GNWYASSSFVTRKFAKKLSSSCVKTLSST 569
           G WY+  S  T    K+L  SC   L ST
Sbjct: 665 GWWYSVESSSTAYLLKQLEKSCTLALKST 693


>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249


>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249


>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNISRIEYSSNKFLNHTRK 249


>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249


>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 631 NWTKHTNCRRIN-SKINKNENKFVQYTKK 714
           N T   N R+ N S+I  + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,682
Number of Sequences: 5004
Number of extensions: 48308
Number of successful extensions: 165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)