Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120395.Seq
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.9  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.8  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 364 CEQVYPDKDFSLKLKR 411
           CE+ YPD  F++ L+R
Sbjct: 219 CEEPYPDIVFNITLRR 234


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 373 VYPDKDFSLKLKRVINMF 426
           V+P   FSL L +V+++F
Sbjct: 139 VHPSATFSLDLNKVVSVF 156


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 364 CEQVYPDKDFSLKLKR 411
           C++ YPD  F++ L+R
Sbjct: 218 CDEPYPDIFFNITLRR 233


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 284 FFIKLDILTSLIINLLSWYFCLKSHQA 204
           +F+    L S++I +LSW     +H+A
Sbjct: 243 YFVFQTYLPSILIVMLSWVSFWINHEA 269


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 501 ATGDFLIHALLNNVSVTFTLHR 566
           A+GD+ I A    V  TF LHR
Sbjct: 428 ASGDYTIPAGCTVVIGTFKLHR 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,944
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)